Abstract
Managing the green proteomes for the next decade of plant research
Highlights
Plant proteomic resources are often integrative and comprise collections of diverse ‘omics information to support the proteomic data
A focused resource, the Plant Protein DataBase (PPDB) deals with subcellular proteomics and encompasses other plant species (Sun et al, 2009). The latter two resources are not part of this collection, data housed by these repositories are available through the MASCP Gator, a portal designed to aggregate Arabidopsis proteomic data for the community
Large-scale developmental and organ specific analyses of the rice proteome has been conducted. These data are available through the rice proteogenomics database (OryzaPGDB) which provides a visual relationship between the genome and the identified proteome (Helmy et al, 2012)
Summary
Plant proteomic resources are often integrative and comprise collections of diverse ‘omics information to support the proteomic data. More focused resources such as pep2pro was constructed to support large-scale proteomic surveys in the model plant Arabidopsis (Hirsch-Hoffmann et al, 2012). The GelMap resource provides annotated two-dimensional arrays of proteins from a range of sample types. The application of proteomics to characterize organelles were some of the first large-scale surveys in plants.
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