Knowledge-injected Prompt Learning for Chinese Biomedical Entity Normalization

Abstract

The Biomedical Entity Normalization (BEN) task aims to align raw, unstructured medical entities to standard entities, thus promoting data coherence and facilitating better downstream medical applications. Recently, prompt learning methods have shown promising results in the natural language processing field. However, existing research falls short in tackling the more complex Chinese BEN task, especially in the few-shot scenario with limited medical data, and the vast potential of the external medical knowledge base has not yet been fully exploited. To address these challenges, this article proposes a novel Knowledge-injected Prompt Learning (PL-Knowledge) method. Specifically, the approach consists of five stages: candidate entity matching, knowledge extraction, knowledge encoding, knowledge injection, and prediction output. By effectively encoding the knowledge items contained in medical entities and incorporating them into tailor-made knowledge-injected templates, the additional knowledge enhances the model’s ability to capture latent relationships between medical entities, thus achieving a better match with the standard entities. Comprehensive experiments are conducted on a benchmark dataset in both few-shot and full-scale settings. This method outperforms existing baselines, with an average accuracy improvement of 12.96 percentage points in few-shot and 0.94 percentage points in full-data cases, showcasing its excellence in the BEN task.