Abstract
We describe a new tool, KATKA, that stores a phylogenetic tree such that later, given a pattern and an integer , it can quickly return the root of the smallest subtree of containing all the genomes in which the k-mer occurs, for . This is similar to KRAKEN's functionality but with given at query time instead of at construction time.
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Schedule a callMore From: International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium)
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