Abstract
Deoxyribonucleic acid (DNA) carries the genetic information essential for the growth and functioning of living organisms, playing a significant role in life sciences research. However, the long-term storage and preservation of DNA, while ensuring its bioactivity, are still current challenges to overcome. In this work, aqueous solutions of ionic liquids (ILs) were investigated as potential preservation media for double stranded (dsDNA). A screening of several ILs, by combining the cholinium, tetrabutylammonium, tetrabutylphosphonium, and 1-ethyl-3-methylimidazolium, cations with the anions bromide, chloride, dihydrogen phosphate, acetate, and glycolate, was carried out in order to gather fundamental knowledge on the molecular features of ILs that improve the dsDNA stability. Different IL concentrations and the pH effect were also addressed. Circular dichroism (CD) spectroscopy was used to evaluate the conformational structure and stability of dsDNA. IL-DNA interactions were appraised by UV-Vis absorption spectrophotometry and 31P nuclear magnetic resonance (NMR) spectroscopy. The results obtained demonstrate that pH has a significant effect towards the dsDNA stability. Amongst the ILs investigated, cholinium-based ILs are the most promising class of ILs to preserve the dsDNA structure, in which electrostatic interactions between the cholinium cation and the DNA phosphate groups play a significant role as demonstrated by the 31P NMR data, being more relevant at higher IL concentrations. On the other hand, the denaturation of dsDNA mainly occurs with ILs composed of more hydrophobic cations and able to establish dispersive interactions with the nucleobases environment. Furthermore, the IL anion has a weaker impact when compared to the IL cation effect to interact with DNA molecules. The experimental data of this work provide relevant fundamental knowledge for the application of ILs in the preservation of nucleic acids, being of high relevance in the biotechnology field.
Highlights
Deoxyribonucleic acid (DNA) is one of the most important macromolecules in cells, carrying the genetic information essential for the growth and functioning of living organisms
We investigated a series of hydrophilic ionic liquids (ILs) in aqueous solutions in order to extend the scientific knowledge about the DNA stability and binding phenomenon occurring between IL and DNA in aqueous solutions, aiming at identifying promising ILs and adequate concentrations to be used in formulations and extraction/separation processes
The evaluation of the Double stranded deoxyribonucleic acid (dsDNA) stability in aqueous solutions of ILs is of high complexity, when aiming the understanding of the interactions occurring between dsDNA and each IL
Summary
Deoxyribonucleic acid (DNA) is one of the most important macromolecules in cells, carrying the genetic information essential for the growth and functioning of living organisms. DNA is arranged in a helical stranded structure, but it can adopt different three-dimensional conformations. Because of this structural polymorphism (Renciuk et al, 2009), experimentally, DNA can be designed. Due to its degradation by nucleobases and chemical instability, DNA is not stable in aqueous solutions at room temperature for long periods (Lindahl and Nyberg, 1972; Sasaki et al, 2007). Temperature, ionic strength, pH and solvent type, and concentration are critical factors that lead to DNA destabilization (Lindahl and Nyberg, 1972; Cheng and Pettitt, 1992). Long-term storage and preservation of DNA at room temperature, while ensuring its bioactivity, are important issues, motivating the research on effective and sustainable solvents for DNA preservation
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