Abstract

Influenza viruses infect millions of humans every year causing an estimated 400,000 deaths globally. Due to continuous virus evolution current vaccines provide only limited protection against the flu. Several antiviral drugs are available to treat influenza infection, and one of the most commonly used drugs is oseltamivir (Tamiflu). While the mechanism of action of oseltamivir as a neuraminidase inhibitor is well-understood, the impact of oseltamivir on influenza virus dynamics in humans has been controversial. Many clinical trials with oseltamivir have been done by pharmaceutical companies such as Roche but the results of these trials until recently have been provided as summary reports or papers. Typically, such reports included median virus shedding curves for placebo and drug-treated influenza virus infected volunteers often indicating high efficacy of the early treatment. However, median shedding curves may be not accurately representing drug impact in individual volunteers. Importantly, due to public pressure clinical trials data testing oseltamivir efficacy has been recently released in the form of redacted PDF documents. We digitized and re-analyzed experimental data on influenza virus shedding in human volunteers from three previously published trials: on influenza A (1 trial) or B viruses (2 trials). Given that not all volunteers exposed to influenza viruses actually start virus shedding we found that impact of oseltamivir on the virus shedding dynamics was dependent on (i) selection of volunteers that were infected with the virus, and (ii) the detection limit in the measurement assay; both of these details were not well-articulated in the published studies. By assuming that any non-zero viral measurement is above the limit of detection we could match previously published data on median influenza A virus (flu A study) shedding but not on influenza B virus shedding (flu B study B) in human volunteers. Additional analyses confirmed that oseltamivir had an impact on the duration of shedding and overall shedding (defined as area under the curve) but this result varied by the trial. Interestingly, treatment had no impact on the rates at which shedding increased or declined with time in individual volunteers. Additional analyses showed that oseltamivir impacted the kinetics of the end of viral shedding, and in about 20–40% of volunteers that shed the virus treatment had no impact on viral shedding duration. Our results suggest an unusual impact of oseltamivir on influenza viruses shedding kinetics and caution about the use of published median data or data from a few individuals for inferences. Furthermore, we call for the need to publish raw data from critical clinical trials that can be independently analyzed.

Highlights

  • Influenza is a respiratory infection caused by different strains of the influenza virus

  • In clinical trials testing efficacy of oseltamivir, healthy volunteers were inoculated with a defined dose of the influenza A or B viruses

  • Many volunteers did not shed any detectable virus for the whole duration of the clinical trial (Table 1 and Supplementary Figures 1–9): Flu A: placebo 4/16 (25%) and treated 10/64 (15%) or 17.5% overall (χ12 = 0.78, p = 0.38 for placebo vs. treated volunteers); Flu B study A: placebo 7/20 (35%) and treated 20/40 (50%) or 45% overall (χ12 = 1.21, p = 0.27); Flu B study B: placebo 12/39 (30%) and treated 29/78 (37%) or 35% overall (χ12 = 0.47, p = 0.49). These individuals were excluded from further analyses on the kinetics of viral shedding

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Summary

Introduction

Influenza is a respiratory infection caused by different strains of the influenza virus. Disease, caused by influenza viruses, commonly known as the flu, typically affects the upper respiratory system such as the sinus cavities, throat, and sometimes the lungs (Moghadami, 2017). Millions are infected with influenza viruses globally, and 400,000–500,000 people die each year from complications following influenza virus infections (Petrova and Russell, 2018; Paget et al, 2019). The influenza virus has a high mutation rate resulting in new strains (antigenic drift) that are not readily recognized by immunity of individuals who previously experienced influenza infection (Moghadami, 2017). Reassortment of viral genes may occur resulting in variants that are markedly different from currently circulating strains (antigenic shift); such process often results in a pandemic (Kim et al, 2018)

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