Illustrating the atomic structure and formation mechanism of ion tracks in polyethylene terephthalate with molecular dynamics simulations

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This work reports molecular dynamics (MD) simulations of the formation of detailed ion track structures at the atomic scale in polymers. To simulate the initial chemical reactions and the subsequent thermal movement of polymer molecules, an adapted thermal spike model was implemented using a charge-implicit reactive force field potential. The MD simulation reproduces the physical–chemical process of ion track formation observed in the experiment, e.g., the bond breakage and creation, gas production and release, carbonization effect, and the relative radial density distributions, which are consistent with small angle X-ray scattering results of ion tracks in polyethylene terephthalate generated with 15.9 keV nm−1 Au and 10.9 keV nm−1 Xe ions, respectively. Based on the MD simulation, the ion tracks in polymers show a heavily-damaged core region with an inhomogeneous nanoporous structure, and a surrounding transition region with the mass density increasing gradually back to the same value as the pristine sample.