Abstract

During each step taken by a dimeric kinesin motor, one motor domain must release from its previous binding site on the microtubule and move 16 nm forward to the next binding site. This stepping process is thought to involve both concerted conformational changes and diffusive movement, but the relative role played by these two processes is not clear. We are investigating this question by computationally modeling the chemomechanical cycle of kinesin using Brownian dynamics simulations. The simulations model the diffusion of the tethered kinesin head and incorporate resistive forces from the motor's flexible neck-linker domain and a distance-dependent on-rate for binding to the next site on the microtubule.

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