Abstract

The membrane trafficking is an essential process of eukaryotic cells, as it manages vesicular trafficking toward different parts of the cell. In this process, membrane fusions between vesicles and target membranes are mediated by several factors, including the multisubunit tethering complexes. One type of multisubunit tethering complex, the complexes associated with tethering containing helical rods (CATCHR), encompasses the exocyst, COG, GARP, and DSL1 complexes. The CATCHR share similarities at sequence, structural, and protein-complex organization level although their actual relationship is still poorly understood. In this study, we have re-evaluated CATCHR at different levels, demonstrating that gene duplications followed by neofunctionalization, were key for their origin. Our results, reveals that there are specific homology relationships and parallelism within and between the CATCHR suggesting that most of these complexes are composed by modular tetramers of four different kinds of proteins, three of them having a clear common origin. The extension of CATCHR family occurred concomitantly with the protein family expansions of their molecular partners, such as small GTPases and SNAREs, among others, and likely providing functional specificity. Our results provide novel insights into the structural organization and mechanism of action of CATCHR, with implications for the evolution of the endomembrane system of eukaryotes and promoting CATCHR as ideal candidates to study the evolution of multiprotein complexes.

Highlights

  • The development of the cellular endomembrane system was one of the main triggers of the emergence of eukaryotic life

  • We detected no significant hits of complexes associated with tethering containing helical rods (CATCHR) protein searches against prokaryotic proteomes, establishing CATCHR complexes as eukaryotic innovations

  • We looked at the conservation of CATCHR proteins across the eukaryotic domain

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Summary

Introduction

The development of the cellular endomembrane system was one of the main triggers of the emergence of eukaryotic life. One essential part of this system is vesicle trafficking, which manages the movement of molecules toward different parts of the cell and requires several processes, namely cargo recognition, coat formation, budding/scission, uncoating, delivery, and fusion. For the latter process, multisubunit tethering complexes (MTCs) are in general terms, mediators of the initial interaction between transport vesicles and their target membranes. MTCs are large heteromeric complexes that vary in the number and composition of their subunits They are divided into three main groups with internal relationships, but which are not evolutionarily related between them (Koumandou et al 2007). Some CATCHR are modular; for example, the endosomeassociated recycling protein (EARP) complex is an alternative version of GARP in which the Vps subunit is replaced by its homolog, Vps (Schindler et al 2015)

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