Abstract
BackgroundPancreatic cancer is one of the most serious digestive malignancies. At present, there is an extreme lack of effective strategies in clinical treatment. The purpose of this study is to identify key genes and pathways in the development of pancreatic cancer and provide targets for the treatment of pancreatic cancer.MethodsGSE15471 and GSE62165 were used to screen differentially expressed genes by GEO2R tool. Hub genes prognostic potential assessed using the GEPIA and Kaplan–Meier plotter databases. The drug susceptibility data of pan-cancer cell lines is provided by The Genomics of Drug Sensitivity in Cancer Project (GDSC). Finally, the effects of PI3K–Akt signaling pathway inhibitors on cell viability of pancreatic cancer cells were detected by cell proliferation and invasion assays.ResultsA total of 609 differentially expressed genes were screened and enriched in the focal adhesion, phagosome and PI3K–Akt signaling pathway. Of the 15 hub genes we found, four were primarily associated with the PI3K–Akt signaling pathway, including COL3A1, EGF, FN1 and ITGA2. GDSC analysis showed that mTOR inhibitors are very sensitive to pancreatic cancer cells with mutations in EWSR1.FLI1 and RNF43. Cell proliferation and invasion results showed that mTOR inhibitors (GSK2126458) can inhibit the proliferation of pancreatic cancer cells.ConclusionsThis study suggested that the PI3K–Akt signaling pathway may be a key pathway for pancreatic cancer, our study uncovered the potential therapeutic potential of GSK2126458, a specific mTOR inhibitor, for pancreatic cancer.
Highlights
Pancreatic cancer is one of the most serious digestive malignancies
Identifying the hub genes and key pathways of this disease is important for further studying the pathogenesis of pancreatic cancer and develop more effective treatment methods
It is necessary to check whether the data is highly standardized gene expression profile data, which can be used for subsequent differentially expressed genes (DEGs) analysis (Additional file 1: Figure S1)
Summary
Pancreatic cancer is one of the most serious digestive malignancies. At present, there is an extreme lack of effective strategies in clinical treatment. The purpose of this study is to identify key genes and pathways in the development of pancreatic cancer and provide targets for the treatment of pancreatic cancer. Identifying the hub genes (genes that play a vital role in biological processes) and key pathways of this disease is important for further studying the pathogenesis of pancreatic cancer and develop more effective treatment methods. Bioinformatics analysis studies have identified several potential biomarkers [11,12,13,14]. These results do not adequately explain how pancreatic cancer cells survive hypoxic conditions, which are often associated with inadequate nutrient supply
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