Genome-wide characterization of MATE family members in common bean (Phaseolus vulgaris Linn.) and their expression profiles in response to abiotic stress

Abstract

Multidrug and toxic compound extrusion (MATE) family plays an important role in the detoxification process of plants under various stresses. Nevertheless, a comprehensive study on MATE family members has thus far not been performed in common bean (Phaseolus vulgaris Linn.), limiting our understanding of its functions in common bean acclimation to stressful environments. In this study, a total of 56 PvMATEs members with uneven distribution on all chromosomes were identified from the common bean genome, with the most on chromosome 4 (10 members) and the least on chromosome 6 and 10 (1 members). Based on their orthologous relationship with those from Arabidopsis and rice, PvMATEs were classified into Clades I, II, III and Ⅳ, wherein 19, 15, 14, and 8 members were included, respectively. Gene ontology (GO) term and cis-regulatory element (CRE) analyses results indicated that the potential functions of PvMATEs were involved in hormonal response, developmental regulation and multiple stress response of common bean. The results of Phytozome and qRT-PCR analyze showed that the expression of PvMATEs in common bean are tissue specificity, with the most in root. Furthermore, 75 mM NaCl, 75 mM CuCl2, 0.35uM HgCl2, 16uM CdCl2, 4.38uM Benzo[c]-phenanthrene (C18H12) and 10 % PEG6000 treatments significantly up-regulated the expression levels of some PvMATEs in common bean roots, indicating that these genes are involved in multiple abiotic stresses respond of common bean. Taken together, these observations enriched our knowledge of MATE family in the common bean and benefit for breeding improved cultivars.