Abstract
The intertidal zone is a transitional area of the land-sea continuum, in which physical and chemical properties vary during the tidal cycle and highly toxic sulfides are rich in sediments due to the dynamic regimes. As a typical species thriving in this habitat, Urechis unicinctus presents strong sulfide tolerance and is expected to be a model species for sulfide stress research. Heat shock proteins (HSPs) consist of a large group of highly conserved molecular chaperones, which play important roles in stress responses. In this study, we systematically analyzed the composition and expression of HSPs in U. unicinctus. A total of eighty-six HSP genes from seven families were identified, in which two families, including sHSP and HSP70, showed moderate expansion, and this variation may be related to the benthic habitat of the intertidal zone. Furthermore, expression analysis revealed that almost all the HSP genes in U. unicinctus were significantly induced under sulfide stress, suggesting that they may be involved in sulfide stress response. Weighted gene co-expression network analysis (WGCNA) showed that 12 HSPs, including 5 sHSP and 4 HSP70 family genes, were highly correlated with the sulfide stress response which was distributed in steelblue and green modules. Our data indicate that HSPs, especially sHSP and HSP70 families, may play significant roles in response to sulfide stress in U. unicinctus. This systematic analysis provides valuable information for further understanding of the function of the HSP gene family for sulfide adaptation in U. unicinctus and contributes a better understanding of the species adaptation strategies of marine benthos in the intertidal zone.
Highlights
Results and DiscussionAll the putative Heat shock proteins (HSPs) sequences were obtained by an HMMER search, and confirmed by the presence of characteristic conserved domains using Pfam, SMART, and National Center for Biotechnology Information (NCBI)-CDD
Introduction published maps and institutional affilHeat shock proteins (HSPs) are a set of evolutionarily conserved molecular chaperones that exist widely, from bacteria to animals
A total of 86 putative HSP genes were identified in the U. unicinctus genome, which included 1 HSP10, 27 sHSP, 30 HSP40, 1 HSP60, 23 HSP70, 3 HSP90, and
Summary
All the putative HSP sequences were obtained by an HMMER search, and confirmed by the presence of characteristic conserved domains using Pfam, SMART, and NCBI-CDD. Annotation and nomenclature of these HSP genes were completed based on amino acid sequence similarities and phylogenetic analysis In U. unicinctus, similar characteristics were presented, such as in HSP110 genes with 24 introns, and most HSP40 and. To assess the diversity and similarity of motif compositions among the different HSP genes, a conserved motif analysis was performed by MEME. In U. unicinctus, HSP90 family members demonstrated the same motif composition, reflecting their high evolutionary conservation, whereas other HSP families presented variable motif patterns. The conserved motif analysis results indicated that the HSP70cE subfamily was the least-conserved subfamily of the HSP70 family in U. unicinctus, suggesting that the HSP70cE subfamily may have unique biological functions.
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