Abstract

Rhizobium leguminosarum bv. trifolii strain WSM597 is an aerobic, motile, Gram-negative, non-spore-forming rod isolated from a root nodule of the annual clover Trifolium pallidum L. growing at Glencoe Research Station near Tacuarembó, Uruguay. This strain is generally ineffective for nitrogen (N2) fixation with clovers of Mediterranean, North American and African origin, but is effective on the South American perennial clover T. polymorphum Poir. Here we describe the features of R. leguminosarum bv. trifolii strain WSM597, together with genome sequence information and annotation. The 7,634,384 bp high-quality-draft genome is arranged in 2 scaffolds of 53 contigs, contains 7,394 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Highlights

  • A key factor which limits the productivity of agricultural systems is the availability of soil nitrogen (N)

  • Since Trifolium spp. are geographically widely distributed and are phenologically variable, it is rare that a single strain of R. leguminosarum bv. trifolii can effectively fix N2 across a wide diversity of clovers [5]

  • Rhizobium leguminosarum bv. trifolii strain WSM597 was isolated from the nodules of Trifolium pallidum, which were collected from the INIA Glencoe Research Station, Uruguay in 1999

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Summary

Introduction

A key factor which limits the productivity of agricultural systems is the availability of soil nitrogen (N). Legumes can overcome soil N limitations by forming symbiotic relationships with root nodule bacteria (rhizobia). Rhizobia, through their interaction with legumes, are able to reduce atmospheric dinitrogen (N2) into ammonia, which can supply essential N for growth to the plant. Biological N2 fixation forms a vital component of sustainable agriculture as it provides a means of ameliorating N-deficient soils without the need for industrially synthesized Nbased fertilizers, the production and application of which have significant environmental and economic costs [2]. There are approximately 110 million ha of forage and fodder legumes under production [3], of which Trifolium spp. Trifolii can effectively fix N2 across a wide diversity of clovers [5] Since Trifolium spp. are geographically widely distributed and are phenologically variable (i.e. they may be either annual [e.g. T. subterraneum, T. pallidum and T. scutatum] or perennial [e.g. T. pratense, T. repens and T. polymorphum]), it is rare that a single strain of R. leguminosarum bv. trifolii can effectively fix N2 across a wide diversity of clovers [5]

The Genomic Standards Consortium
Classification and general features
Genome sequencing and annotation information
Leg ume root nodule
Standards in Genomic Sciences
Growth conditions and DNA isolation
Genome properties
Findings
Acknowledg ements

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