Abstract
BackgroundEpstein–Barr virus (EBV) targets B-cells where it establishes a latent infection. EBV can transform B-cells in vitro and is recognized as an oncogenic virus, especially in the setting of immune compromise. Indeed, immunodeficient patients may fail to control chronic EBV infection, leading to the development EBV-driven lymphoid malignancies. Ataxia telangiectasia (AT) is a primary immune deficiency caused by mutations in the ATM gene, involved in the repair of double-strand breaks. Patients with AT are at high risk of developing cancers, mostly B-cell lymphoid malignancies, most of which being EBV-related. Aside from immune deficiency secondary to AT, loss of ATM function could also hinder the control of the virus within B-cells, favoring lymphomagenesis in AT patients.ResultsWe used RNA sequencing on lymphoblastoid cell lines derived from patients with AT and healthy donors to analyze and compare both cellular and viral gene expression. We found numerous deregulated signaling pathways involving transcription, translation, oncogenesis and immune regulation. Specifically, the translational defect was confirmed in vitro, suggesting that the pathogenesis of AT may also involve a ribosomal defect. Concomitant analysis of viral gene expression did not reveal significant differential gene expression, however, analysis of EBV interactome suggests that the viral latency genes EBNA-3A, EBNA-3C and LMP1 may be disrupted in LCL from AT patients.ConclusionOur data support the notion that ATM deficiency deregulates cellular gene expression possibly disrupting interactions with EBV latent genes, promoting the oncogenic potential of the virus. These preliminary findings provide a new step towards the understanding of EBV regulation and of AT pathogenesis.
Highlights
Epstein–Barr virus (EBV) targets B-cells where it establishes a latent infection
Principal component analysis (PCA) shows that lymphoblastoid cell lines (LCL)-Ataxia telangiectasia (AT) and WT segregate into two distinct groups (Fig. 1c)
Among the main oncogenes induced in LCL-AT, we find BCL11A, a modulator of transcriptional repression frequently upregulated in B-cell malignancies [25, 26] or TCL1A, a survival promoting factor strongly associated with Burkitt lymphoma and related to other malignancies [27, 28]
Summary
Epstein–Barr virus (EBV) targets B-cells where it establishes a latent infection. EBV can transform B-cells in vitro and is recognized as an oncogenic virus, especially in the setting of immune compromise. Several primary immune deficiencies (PID) are associated with poor EBV responses and are at high risk for EBV-related malignancies [3]. A number of PIDs exhibit a selective susceptibility to EBV-related malignancies, while displaying a more restricted susceptibility to other opportunistic infections. In such cases, specific mechanisms may include pathways important for T, NK and iNKT cytotoxicity aimed at EBV-infected B-cells, and pathways involved in expansion of EBV-specific T-cells, leading to an inability to cope with intense EBV induced proliferative stress like in XMEN or CTPS1 mutated patients [7]. We raised the hypothesis that the lack of ATM function in AT patients may be associated with a less stringent control of EBV latency in ATM-deficient B cells, thereby promoting the oncogenic properties of the virus
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