Abstract

Hypothesis testing is a central statistical method in psychology and the cognitive sciences. However, the problems of null hypothesis significance testing (NHST) and p values have been debated widely, but few attractive alternatives exist. This article introduces the fbst R package, which implements the Full Bayesian Significance Test (FBST) to test a sharp null hypothesis against its alternative via the e value. The statistical theory of the FBST has been introduced more than two decades ago and since then the FBST has shown to be a Bayesian alternative to NHST and p values with both theoretical and practical highly appealing properties. The algorithm provided in the fbst package is applicable to any Bayesian model as long as the posterior distribution can be obtained at least numerically. The core function of the package provides the Bayesian evidence against the null hypothesis, the e value. Additionally, p values based on asymptotic arguments can be computed and rich visualizations for communication and interpretation of the results can be produced. Three examples of frequently used statistical procedures in the cognitive sciences are given in this paper, which demonstrate how to apply the FBST in practice using the fbst package. Based on the success of the FBST in statistical science, the fbst package should be of interest to a broad range of researchers and hopefully will encourage researchers to consider the FBST as a possible alternative when conducting hypothesis tests of a sharp null hypothesis.

Highlights

  • Hypothesis testing is a widely used method in the cognitive and biomedical sciences

  • The R package fbst introduced in this paper offers an intuitive and widely applicable software implementation of the Full Bayesian Significance Test (FBST) and the e value

  • This paper introduced the R package fbst for computing the Full Bayesian Significance Test and the e value for testing a sharp hypothesis against the alternative

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Summary

Introduction

Hypothesis testing is a widely used method in the cognitive and biomedical sciences. the recently experienced replication crisis troubles experimental sciences, and the underlying problems are still widely debated (Wagenmakers & Pashler, 2012; Pashler & Harris, 2012; Wasserstein et al, 2019; Haaf et al, 2019). The last property is, in particular, appealing in practical research, as it allows to stop recruiting participants and report the results based on the collected data in case they already show overwhelming evidence Notice that this is not permitted when making use of NHST and p values, which can lead to financial and ethical problems, in particular in the biomedical and psychological sciences. The FBST and e value could be an appealing Bayesian alternative to NHST and p values, which has been widely under-utilized in the cognitive and biomedical sciences This clearly can be attributed to the dearth of accessible software implementations, one of which is presented in form of the R package introduced in this paper. The fbst package hopefully will foster critical discussion and reflection about different approaches to Bayesian hypothesis testing and allow to pursue further research to investigate the relationship between different posterior indices for significance and effect size (Kelter, 2020a; Makowski et al, 2019; Liao et al, 2020)

Conceptual approach of the FBST
Statistical theory of the FBST
Overview and functionality of the fbst package
Findings
Discussion
Full Text
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