Abstract
Fastlin is a bioinformatics tool designed for rapid MTBC lineage typing. It utilises an ultra-fast alignment-free approach to detect previously identified barcode single nucleotide polymorphisms (SNPs) associated with specific MTBC lineages. In a comprehensive benchmarking against existing tools, fastlin demonstrated high accuracy and significantly faster running times. fastlin is freely available at https://github.com/rderelle/fastlin and can easily be installed using Conda. Supplementary data are available at Bioinformatics online.
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