Abstract

We had participated in the CASP (Community Wide Experiment on the Critical Assessment of Tech-niques for Protein Structure Prediction) that is the competition of the protein structure predictionin 2000 and 2002. Our server were estimated almost the best as the individual homology modelingserver in the CAFASP3 (Critical Assessment of Fully Automated Structure Prediction) that is thefull automatic homology modeling section of CASP5. In this competition we used homology modelingsoftware FAMS [1] (Full automatic protein modeling system) that we had been developed for severalyears [3]. Thus, usefulness of the software FAMS was clearly shown in these competitions.We also have developed FAMSBASE that is web interface of FAMS model structure database. Inthis article we describe that proteins coded in the 161 species genomes were modeled.The commercial version of FAMS modeling software service is available in In-Silico Sciences,Inc. (http://www.pd-fams.com). FAMSBASE is available in http://famsbase.bio.nagoya-u.ac.jp/[4] or http://www.pdfams.jbic.or.jp/.

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