Abstract
SummarySignificance analysis of microarrays (SAM) is a highly popular permutation-based multiple-testing method that estimates the false discovery proportion (FDP): the fraction of false positive results among all rejected hypotheses. Perhaps surprisingly, until now this method had no known properties. This paper extends SAM by providing 1 − α upper confidence bounds for the FDP, so that exact confidence statements can be made. As a special case, an estimate of the FDP is obtained that underestimates the FDP with probability at most 0.5. Moreover, using a closed testing procedure, this paper decreases the upper bounds and estimates in such a way that the confidence level is maintained. We base our methods on a general result on exact testing with random permutations.
Sign-in/Register to access full text options 
Talk to us
Join us for a 30 min session where you can share your feedback and ask us any queries you have
Schedule a callMore From: Journal of the Royal Statistical Society Series B: Statistical Methodology
Disclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.
