Abstract
Background.Detection of pneumococcus by lytA polymerase chain reaction (PCR) in blood had poor diagnostic accuracy for diagnosing pneumococcal pneumonia in children in 9 African and Asian sites. We assessed the value of blood lytA quantification in diagnosing pneumococcal pneumonia.Methods.The Pneumonia Etiology Research for Child Health (PERCH) case-control study tested whole blood by PCR for pneumococcus in children aged 1–59 months hospitalized with signs of pneumonia and in age–frequency matched community controls. The distribution of load among PCR-positive participants was compared between microbiologically confirmed pneumococcal pneumonia (MCPP) cases, cases confirmed for nonpneumococcal pathogens, nonconfirmed cases, and controls. Receiver operating characteristic analyses determined the “optimal threshold” that distinguished MCPP cases from controls.Results.Load was available for 290 of 291 cases with pneumococcal PCR detected in blood and 273 of 273 controls. Load was higher in MCPP cases than controls (median, 4.0 × 103 vs 0.19 × 103 copies/mL), but overlapped substantially (range, 0.16–989.9 × 103 copies/mL and 0.01–551.9 × 103 copies/mL, respectively). The proportion with high load (≥2.2 log10 copies/mL) was 62.5% among MCPP cases, 4.3% among nonconfirmed cases, 9.3% among cases confirmed for a nonpneumococcal pathogen, and 3.1% among controls. Pneumococcal load in blood was not associated with respiratory tract illness in controls (P = .32). High blood pneumococcal load was associated with alveolar consolidation on chest radiograph in nonconfirmed cases, and with high (>6.9 log10 copies/mL) nasopharyngeal/oropharyngeal load and C-reactive protein ≥40 mg/L (both P < .01) in nonconfirmed cases but not controls.Conclusions.Quantitative pneumococcal PCR in blood has limited diagnostic utility for identifying pneumococcal pneumonia in individual children, but may be informative in epidemiological studies.
Highlights
Detection of pneumococcus by lytA polymerase chain reaction (PCR) in blood had poor diagnostic accuracy for diagnosing pneumococcal pneumonia in children in 9 African and Asian sites
The distribution of load among PCR-positive participants was compared between microbiologically confirmed pneumococcal pneumonia (MCPP) cases, cases confirmed for nonpneumococcal pathogens, nonconfirmed cases, and controls
When blood pneumococcal PCR was evaluated in the Pneumonia Etiology Research for Child Health (PERCH) study, we found that whole-blood lytA positivity had poor diagnostic accuracy, in terms of both sensitivity and specificity [3]
Summary
The Pneumonia Etiology Research for Child Health (PERCH) case-control study tested whole blood by PCR for pneumococcus in children aged 1–59 months hospitalized with signs of pneumonia and in age–frequency matched community controls. As described and presented elsewhere [8, 9], PERCH is a case-control study evaluating the etiology of severe and very severe pneumonia conducted in 9 sites in 5 African and 2 Asian countries: Basse, The Gambia; Bamako, Mali; Kilifi, Kenya; Soweto, South Africa; Lusaka, Zambia; Nakhon Phanom and Sa Kaeo, Thailand; and Dhaka and Matlab, Bangladesh. Cases were children aged 1–59 months hospitalized with 2005 World Health Organization (WHO)–defined severe or very severe pneumonia. Controls were enrolled regardless of presence of respiratory symptoms, as long as they did not have case-defining severe or very severe pneumonia. Prior antibiotic exposure was defined as either a positive serum bioassay (cases and controls) or documentation of antibiotics administered at the referral or study hospital prior to specimen collection (cases only) [2]
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