Abstract
3′-Untranslated region (UTR) shortening of mRNAs via alternative polyadenylation (APA) has important ramifications for gene expression. By using proximal APA sites and switching to shorter 3′-UTRs, proliferating cells avoid miRNA-mediated repression. Such APA and 3′-UTR shortening events may explain the basis of some of the proto-oncogene activation cases observed in cancer cells. In this study, we investigated whether 17 β-estradiol (E2), a potent proliferation signal, induces APA and 3′-UTR shortening to activate proto-oncogenes in estrogen receptor positive (ER+) breast cancers. Our initial probe based screen of independent expression arrays suggested upregulation and 3′-UTR shortening of an essential regulator of DNA replication, CDC6 (cell division cycle 6), upon E2 treatment. We further confirmed the E2- and ER-dependent upregulation and 3′UTR shortening of CDC6, which lead to increased CDC6 protein levels and higher BrdU incorporation. Consequently, miRNA binding predictions and dual luciferase assays suggested that 3′-UTR shortening of CDC6 was a mechanism to avoid 3′-UTR-dependent negative regulations. Hence, we demonstrated CDC6 APA induction by the proliferative effect of E2 in ER+ cells and provided new insights into the complex regulation of APA. E2-induced APA is likely to be an important but previously overlooked mechanism of E2-responsive gene expression.
Highlights
1.1 Alternative Polyadenylation1.1.1 mRNA 3’-end formationRegulation of mRNA processing is accepted to have essential roles in gene expression. mRNA processing involves splicing, capping, editing, and polyadenylation
APADetect investigates the difference between mean intensities of probes matching to distal and proximal 3’-UTR’s
alternative polyadenylation (APA) dependent 3’-UTR shortening is gaining a well deserved attention due to its potential role in proto-oncogene activation cases where no other causative factor is known. To identify such 3’-UTR shortening cases, an in silico approach that allowed us to re-analyze existing gene expression arrays at the probe level based on the positions of the reported polyA sites
Summary
1.1 Alternative Polyadenylation1.1.1 mRNA 3’-end formationRegulation of mRNA processing is accepted to have essential roles in gene expression. mRNA processing involves splicing, capping, editing, and polyadenylation. Regulation of mRNA processing is accepted to have essential roles in gene expression. MRNA processing involves splicing, capping, editing, and polyadenylation. Excluding replication-dependent histone transcripts, all eukaryotic mRNAs are polyadenylated through a two-step reaction to produce mature 3’-ends. Polyadenylation starts with the endonucleolytic cleavage of the pre-mRNA at a specific site by polyadenylation factors. Poly(A) binding protein (PABP) stimulates PAP to catalyze the addition of adenosine residues and regulates the length of the poly(A) tail [1]. Overall, this process is orchestrated by several protein factors that are directed to specific mRNA sequences to accurately recognize the cleavage site within the pre-mRNA. PremRNA to mRNA maturation is a very rapid event [3, 6,7,8]
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