Estimation of aquatic ecosystem health using deep neural network with nonlinear data mapping

Abstract

Estimation of aquatic ecosystem health indices can assist in reducing the burden of time-consuming, labor-intensive, and cost-effective fieldwork for the sustainable evaluation of freshwater ecosystem status. In this study, we developed a deep neural network to estimate the trophic diatom index (TDI), benthic macroinvertebrate index (BMI), and fish assessment index (FAI) using water quality and hydraulic and hydrological data. A convolutional neural network (CNN) model was built to estimate health indices. In addition, an autoencoder was adopted to produce manifold features that were used as inputs for the CNN model. Conventional machine learning models, including artificial neural networks, support vector machines, random forests, and extreme gradient boosting, have been developed to estimate the TDI, BMI, and FAI. The results showed that the CNN with an autoencoder exhibited the best performance, with validation accuracies of Nash Sutcliffe Efficiency (NSE) and root mean squared error (RMSE) values of 0.592 and 17.249 for TDI, 0.669 and 12.282 for BMI, and 0.638 and 13.897 for FAI, respectively. The autoencoder enhanced the nonlinear feature learning of the time series and static input data, which contributed to improving the CNN feature extraction for accurate estimation of aquatic ecosystem health indices compared to other data-driven approaches. Therefore, deep learning techniques can be used to investigate aquatic ecosystem health by successfully reflecting the quantitative and qualitative features of health indices.