Abstract

SARM1, a protein with critical NADase activity, is a central executioner in a conserved programme of axon degeneration. We report seven rare missense or in-frame microdeletion human SARM1 variant alleles in patients with amyotrophic lateral sclerosis (ALS) or other motor nerve disorders that alter the SARM1 auto-inhibitory ARM domain and constitutively hyperactivate SARM1 NADase activity. The constitutive NADase activity of these seven variants is similar to that of SARM1 lacking the entire ARM domain and greatly exceeds the activity of wild-type SARM1, even in the presence of nicotinamide mononucleotide (NMN), its physiological activator. This rise in constitutive activity alone is enough to promote neuronal degeneration in response to otherwise non-harmful, mild stress. Importantly, these strong gain-of-function alleles are completely patient-specific in the cohorts studied and show a highly significant association with disease at the single gene level. These findings of disease-associated coding variants that alter SARM1 function build on previously reported genome-wide significant association with ALS for a neighbouring, more common SARM1 intragenic single nucleotide polymorphism (SNP) to support a contributory role of SARM1 in these disorders. A broad phenotypic heterogeneity and variable age-of-onset of disease among patients with these alleles also raises intriguing questions about the pathogenic mechanism of hyperactive SARM1 variants.

Highlights

  • The toll-like receptor adaptor protein SARM1 is required for axon degeneration after injury, in response to toxins and other insults, and in several models of neurodegenerative disease (Conforti et al, 2014; Coleman & Höke, 2020)

  • If SARM1 contributes to amyotrophic lateral sclerosis (ALS) pathogenesis, we predicted that there might be a relative paucity of naturally-occurring coding variation in the SAM and TIR domains and/or an enrichment of coding variation in the ARM domain among patients, with the opposite in unaffected individuals

  • We assessed the distribution of mostly rare SARM1 missense single nucleotide polymorphism (SNP) and small, in-frame deletion alleles between cases and controls in Project MinE consortium data freeze 1 (DF1), a public database containing WGS data for 4,366 mostly sporadic ALS

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Summary

Introduction

The toll-like receptor adaptor protein SARM1 is required for axon degeneration after injury, in response to toxins and other insults, and in several models of neurodegenerative disease (Conforti et al, 2014; Coleman & Höke, 2020). In many of these situations the intimate interplay between pro-degenerative SARM1 Recent studies do suggest direct involvement of SARM1 in neuronal cell death in some situations, including photoreceptor loss in models of retinal degeneration and

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