Dynamic transcription analysis reveals the underlying key mechanism of L-arabinose-enhanced tomato resistance to bacterial wilt

Abstract

Tomato bacterial wilt caused by Ralstonia solanacearum is a serious economic soil-borne disease worldwide. L-arabinose (L-Ara) increases tomato resistance to bacterial wilt, but the resistance mechanism remains unclear. In this study, we conducted an RNA sequencing (RNA-seq) analysis of tomato root and stem that exhibited differential expression in response to R. solanacearum infection at 2 dpi and 5 dpi under L-Ara application. As a result, 797 and 5605 differentially expressed genes (DEGs) were identified in response to R. solanacearum infection at 2 dpi and 5 dpi, respectively. In particular, 4504 DEGs with 2501 up-regulated and 2001 down-regulated were presented in the stem at 5 dpi, specifying that most defense responses were expressed at the wilting stage. In the function analysis (GO and KEGG), the DEGs were primarily enriched in response to stress, cell wall, glutathione and phenylpropanoid biosynthesis and plant hormone signaling transduction. Among the DEGs, potential candidate genes related to plant hormone biosynthesis and signaling, phenylpropanoid biosynthesis, and cell wall metabolism were perceived. Furthermore, the transcription factors had high expression in ERF, bHLH, C2H2, MYB, NAC, WRKY, HD-ZIP, bZIP, MYB-related, and GRAS families. This research could provide theoretical support and valuable resources for further study of the prevention and control of bacterial wilt disease under L-Ara treatment .