Abstract

Accumulating evidence has strengthened a link between dysbiotic gut microbiota and autism. Fecal microbiota transplant (FMT) is a promising therapy to repair dysbiotic gut microbiota. We previously performed intensive FMT called microbiota transfer therapy (MTT) for children with autism spectrum disorders (ASD) and observed a substantial improvement of gastrointestinal and behavioral symptoms. We also reported modulation of the gut microbiome toward a healthy one. In this study, we report comprehensive metabolite profiles from plasma and fecal samples of the children who participated in the MTT trial. With 619 plasma metabolites detected, we found that the autism group had distinctive metabolic profiles at baseline. Eight metabolites (nicotinamide riboside, IMP, iminodiacetate, methylsuccinate, galactonate, valylglycine, sarcosine, and leucylglycine) were significantly lower in the ASD group at baseline, while caprylate and heptanoate were significantly higher in the ASD group. MTT drove global shifts in plasma profiles across various metabolic features, including nicotinate/nicotinamide and purine metabolism. In contrast, for 669 fecal metabolites detected, when correcting for multiple hypotheses, no metabolite was significantly different at baseline. Although not statistically significant, p-cresol sulfate was relatively higher in the ASD group at baseline, and after MTT, the levels decreased and were similar to levels in typically developing (TD) controls. p-Cresol sulfate levels were inversely correlated with Desulfovibrio, suggesting a potential role of Desulfovibrio on p-cresol sulfate modulation. Further studies of metabolites in a larger ASD cohort, before and after MTT, are warranted, as well as clinical trials of other therapies to address the metabolic changes which MTT was not able to correct.IMPORTANCE Despite the prevalence of autism and its extensive impact on our society, no U.S. Food and Drug Administration-approved treatment is available for this complex neurobiological disorder. Based on mounting evidences that support a link between autism and the gut microbiome, we previously performed a pioneering open-label clinical trial using intensive fecal microbiota transplant. The therapy significantly improved gastrointestinal and behavioral symptoms. Comprehensive metabolomic measurements in this study showed that children with autism spectrum disorder (ASD) had different levels of many plasma metabolites at baseline compared to those in typically developing children. Microbiota transfer therapy (MTT) had a systemic effect, resulting in substantial changes in plasma metabolites, driving a number of metabolites to be more similar to those from typically developing children. Our results provide evidence that changes in metabolites are one mechanism of the gut-brain connection mediated by the gut microbiota and offer plausible clinical evidence for a promising autism treatment and biomarkers.

Highlights

  • IMPORTANCE Despite the prevalence of autism and its extensive impact on our society, no U.S Food and Drug Administration-approved treatment is available for this complex neurobiological disorder

  • Plasma metabolite profiles in autism spectrum disorder (ASD) versus typically developing (TD) changed after microbiota transfer therapy (MTT)

  • To evaluate differences in metabolite profiles as a group, we generated a heat map and performed a principal-component analysis (PCA) using the 73 plasma metabolites whose levels were relatively different at baseline between the two groups

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Summary

Introduction

IMPORTANCE Despite the prevalence of autism and its extensive impact on our society, no U.S Food and Drug Administration-approved treatment is available for this complex neurobiological disorder. “Autism” is a label given to children with certain significant impairments in social communication and behavior [3] Unlike disorders such as diabetes which have a known biochemical mechanism and biomarker (abnormal blood sugar), there is no general consensus of the biochemical basis of the condition(s) known as ASD. A number of studies have reported that metabolite profiles in fecal, urine, and blood samples from individuals with ASD are different than the metabolite profiles of typically developing children without known disorders [8, 21, 22], children without a family history of autism and unaffected typically developing siblings [21, 23, 24], and healthy adults [25]. Experiments with a maternal immune activation ASD mouse model revealed that 4-ethylphenyl sulfate (4-EPS) and indolepyruvate, two tyrosine/tryptophan derivatives, were significantly higher in mice that had ASD symptoms, and the concentration of 4-EPS demsphere.asm.org 2

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