Abstract
We perform time-correlated single-photon counting measurements with 30-ps resolution of the fluorescence emit- ted by the donor fluorophores of donor-acceptor pairs covalently labeling DNA synthetic oligonucleotides by using a non- commercial single-photon avalanche diode. The measurements allow us to precisely assess the fluorescence resonant energy transfer efficiency of the pairs in solutions containing the oligonucleotides and DNA-ligands, for different ratios of the DNA base-pair to ligand concentrations. A quantitative evaluation of the deformations of DNA double strands following the ligand binding is obtained, as the transfer efficiency is a steep function of the donor-to-acceptor distance. The results lead to an easy and cheap method to discriminate between the binding modes of minor groove and base intercalating ligands.
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