Abstract

Integral membrane proteins (IMPs) are central to many physiological processes and represent ∼60% of current drug targets. An intricate interplay with the lipid molecules in the cell membrane is known to influence the stability, structure and function of IMPs. Detergents are commonly used to solubilize and extract IMPs from cell membranes. However, due to the loss of the lipid environment, IMPs usually tend to be unstable and lose function in the continuous presence of detergent. To overcome this problem, various technologies have been developed, including protein engineering by mutagenesis to improve IMP stability, as well as methods to reconstitute IMPs into detergent-free entities, such as nanodiscs based on apolipoprotein A or its membrane scaffold protein (MSP) derivatives, amphipols, and styrene-maleic acid copolymer-lipid particles (SMALPs). Although significant progress has been made in this field, working with inherently unstable human IMP targets (e.g., GPCRs, ion channels and transporters) remains a challenging task. Here, we present a novel methodology, termed DirectMX (for direct membrane extraction), taking advantage of the saposin-lipoprotein (Salipro) nanoparticle technology to reconstitute fragile IMPs directly from human crude cell membranes. We demonstrate the applicability of the DirectMX methodology by the reconstitution of a human solute carrier transporter and a wild-type GPCR belonging to the human chemokine receptor (CKR) family. We envision that DirectMX bears the potential to enable studies of IMPs that so far remained inaccessible to other solubilization, stabilization or reconstitution methods.

Highlights

  • Integral membrane proteins (IMPs) represent ∼23% of the human proteome (Uhlén et al, 2015), and carry out key functions in many essential cellular processes including signal transduction, membrane trafficking, cellular metabolism, and nutrient transport (Bolla et al, 2019)

  • We present a novel Salipro methodology, termed DirectMX, which allows for a rapid one-step reconstitution of IMPs from crude cell membranes into Salipro nanoparticles (Figure 1)

  • After removal of insoluble material by low speed centrifugation, the remaining material was incubated with an excess of saposin A (SapA) molecules to allow for the reconstitution of all IMPs, including their associated lipids, into Salipro nanoparticles (Figures 1A,B)

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Summary

Introduction

Integral membrane proteins (IMPs) represent ∼23% of the human proteome (Uhlén et al, 2015), and carry out key functions in many essential cellular processes including signal transduction, membrane trafficking, cellular metabolism, and nutrient transport (Bolla et al, 2019). IMPs are anchored in the cell membrane where they interact with a dynamic and complex lipid environment, known to be important for the stability and function of the proteins (Whorton and MacKinnon, 2011; Contreras et al, 2012; Laganowsky et al, 2014; reviewed by Hedger and Sansom, 2016; Pyle et al, 2018). The continuous presence of detergents leads to delipidation of IMPs and may negatively affect the experimental setup and downstream processes

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