Abstract
Beta-thalassaemia is one of the most common autosomal recessive disorders worldwide. The disease’s high incidence, which is observed in the broader Mediterranean area has led to the establishment of molecular diagnostics’ assays to prevent affected births. Therefore, the development of a reliable, cost-effective and rapid scanning method for β globin gene point mutations, easily adapted to a routine laboratory, is absolutely essential. Here, we describe, for the first time, the development of a High-Resolution Melting Analysis (HRMA) approach, suitable for scanning the particularly heterogeneous beta globin gene mutations present in the Greek population, and thus adaptable to the Mediterranean and other areas where these mutations have been identified. Within this context, β globin gene regions containing mutations frequently identified in the Greek population were divided in ten overlapping amplicons. Our reactions’ setup allowed for the simultaneous amplification of multiple primer sets and partial multiplexing, thereby resulting in significant reduction of the experimental time. DNA samples from β-thalassaemia patients/carriers with defined genotypes were tested. Distinct genotypes displayed distinguishable melting curves, enabling accurate detection of mutations. The described HRMA can be adapted to a high-throughput level. It represents a rapid, simple, cost-effective, reliable, highly feasible and sensitive method for β-thalassaemia gene scanning.
Highlights
Inherited haemoglobin disorders (HD) are the most frequent monogenic diseases worldwide
All possible combinations of the Greek population frequent mutations, which are located in this region, namely, -101 (C>T), -87 (C>G) and CAP +20 (C>T) [polymorphism associated to IVS II-745 (C>G) mutation], are clearly distinguishable
The high incidence and strong association of the above polymorphism with one of the most frequent mutations in the Greek population located in the same amplicon [IVS I-6 (T>C)] prompted us to design two smaller, overlapping, amplicons (TH2A and TH2B, Table 5), in order to avoid multiple melting curves due to the CD2polymorphism
Summary
Inherited haemoglobin disorders (HD) are the most frequent monogenic diseases worldwide. Seven per cent of the world’s population is estimated to carry a mutation in the beta (β) globin gene (HBB) (GenBankgenomic reference sequence NG_000007.3), in a heterozygous state (carrier), while thousands of newborns are affected by a severe HD. HDs comprise the α and β thalassaemias, sickle-cell disease (SCD) and other haemoglobinopathies [1,2,3]. HDs were initially prevalent across the malaria zone (including the Mediterranean, Middle East and Balkan Peninsula areas);yet nowadays, due to migration, they are practically present all across the PLOS ONE | DOI:10.1371/journal.pone.0157393. Beta Globin Gene Scanning by HRM Analysis HDs were initially prevalent across the malaria zone (including the Mediterranean, Middle East and Balkan Peninsula areas);yet nowadays, due to migration, they are practically present all across the PLOS ONE | DOI:10.1371/journal.pone.0157393 June 28, 2016
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