Abstract
A total of 108 single nucleotide polymorphism (SNP) markers from the Iwagaki oyster, Crassostrea nippona were isolated and characterized based on high-throughput sequencing in this study. The minor allele frequency per locus ranged from 0.0167 to 0.4844. The observed heterozygosity and expected heterozygosity varied from 0 to 0.9688 and 0.0333 to 0.5079, respectively. Eighteen loci showed significant deviation from Hardy–Weinberg equilibrium. These SNP markers described in this study will provide a valuable tool for population genetic analysis and natural resource conservation of C. nippona.
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