Abstract
An approach to solving large resource-consuming problems is proposed based on the application of field-programmable gate array (FPGA) microchips. This approach is demonstrated for application to the problems of searching for common motifs in genetic sequences of regulatory regions of various genes. Due to the high degree of parallelization and high transmission capacity of the internal memory in the employed FPGA crystal, a 60-fold increase in performance was achieved in solving this problem compared to a system based on the CUDA technology and about a 2000-fold increase compared to a personal computer.
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