Abstract
Objective of the studywas to assess the level of infection with Borrelia miyamotoi in ticks Ixodes persulcatus and Ixodes pavlovskyi collected in the south of Western Siberia.Materials and methods.688 ticks I. persulcatus and I. pavlovskyi collected on the territory of Novosibirsk, Tomsk and Kemerovo Regions were examined. Borrelia DNA was detected by a two-round polymerase chain reaction with specifc primers to the omp66 gene region, followed by sequencing of the isolated fragments and phylogenetic analysis, including the sequences of prototype isolates published in the international GenBank database. Comparison and analysis of nucleotide sequences was carried out using the MEGA 7 software package. In parallel, the samples were examined for the presence of the agents of transmissible infections – West Nile fever and tick-borne encephalitis, anaplasmosis, ehrlichiosis, babesiosis, bartonellosis and candidate pathogens of tick-borne rickettsiosis through RT-PCR and PCR with species-specifc and genus-specifc primers.Results and discussion.The genetic material of B. miyamotoi was found in 2.2 % of I. persulcatus and I. pavlovskyi ticks in the Tomsk, Novosibirsk, and Kemerovo Regions and their appurtenance to the Asian genotype was determined. It was revealed that the degree of similarity of the omp66 gene fragments within the group of isolates of the Asian genotype was 100 %. No relation between B. miyamotoi and a specifc vector species was identifed.
Highlights
Сравнение и анализ нуклеотидных последовательностей выполняли с использованием пакета программ MEGA 7
Выявление Borrelia miyamotoi в клещах Ixodes persulcatus на территории России
Summary
ДЕТЕКЦИЯ BORRELIA MIYAMOTOI В ИКСОДОВЫХ КЛЕЩАХ, СОБРАННЫХ НА ЮГЕ ЗАПАДНОЙ СИБИРИ. Цель работы – оценить уровень инфицированности Borrelia miyamotoi клещей Ixodes persulcatus и Ixodes pavlovskyi, собранных на юге Западной Сибири. Исследованы 688 клещей I. persulcatus и I. pavlovskyi, собранных на территории Новосибирской, Томской и Кемеровской областей. ДНК боррелий выявлены методом двухраундовой полимеразной цепной реакции со специфическими праймерами к участку гена omp с последующим секвенированием выделенных фрагментов и проведением филогенетического анализа, включая последовательности прототипных изолятов, опубликованных в международной базе данных GenBank. Сравнение и анализ нуклеотидных последовательностей выполняли с использованием пакета программ MEGA 7. Генетический материал B. miyamotoi выявлен в 2,2 % клещей I. persulcatus и I. pavlovskyi в Томской, Новосибирской и Кемеровской областях, определена их принадлежность к азиатскому генотипу. Установлено, что степень сходства фрагментов гена omp внутри группы, объединяющей изоляты азиатского генотипа, составила 100 %. State Scientific Center of Virology and Biotechnology “Vector”, Kol’tsovo, Novosibirsk Region, Russian Federation
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