Abstract

SummaryThe regulation of many protein kinases by binding to calcium/calmodulin connects two principal mechanisms in signaling processes: protein phosphorylation and responses to dose- and time-dependent calcium signals. We used the calcium/calmodulin-dependent members of the death-associated protein kinase (DAPK) family to investigate the role of a basic DAPK signature loop near the kinase active site. In DAPK2, this loop comprises a novel dimerization-regulated calcium/calmodulin-binding site, in addition to a well-established calcium/calmodulin site in the C-terminal autoregulatory domain. Unexpectedly, impairment of the basic loop interaction site completely abolishes calcium/calmodulin binding and DAPK2 activity is reduced to a residual level, indicative of coupled binding to the two sites. This contrasts with the generally accepted view that kinase calcium/calmodulin interactions are autonomous of the kinase catalytic domain. Our data establish an intricate model of multi-step kinase activation and expand our understanding of how calcium binding connects with other mechanisms involved in kinase activity regulation.

Highlights

  • The human kinome comprises more than 500 protein kinases, around 15% of which are predicted to be regulated by calcium/ calmodulin (Ca2+/CaM) binding (Manning et al, 2002)

  • We used the calcium/calmodulindependent members of the death-associated protein kinase (DAPK) family to investigate the role of a basic DAPK signature loop near the kinase active site

  • Impairment of the basic loop interaction site completely abolishes calcium/calmodulin binding and DAPK2 activity is reduced to a residual level, indicative of coupled binding to the two sites

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Summary

Introduction

The human kinome comprises more than 500 protein kinases, around 15% of which are predicted to be regulated by calcium/ calmodulin (Ca2+/CaM) binding (Manning et al, 2002). Numerous structural studies of kinase ARD peptide-Ca2+/CaM complexes illustrate how both CaM lobes wrap an extended helical ARD segment that is structurally autonomous of the neighboring CD (Dagher et al, 2011; Kuczera and Kursula, 2012). This conclusion was confirmed by a structure of the prototypic calcium/calmodulin-dependent protein kinase II (CaMKII)Ca2+/CaM complex, in which the ARD-Ca2+/CaM-binding module is entirely separate from the CaMKII CD (PDB: 2WEL) (Rellos et al, 2010). The goal of this study was to investigate Ca2+/CaM binding to DAPKs to unravel the mechanism of activity regulation by Ca2+/ CaM binding

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