Data sharing considerations to maximise use of pathogen biological and genomics resources data for public health.

Abstract

Public sector data associated with health is a highly valuable resource with multiple potential end-users, from health practitioners, researchers, public bodies, policy makers and industry. Data for infectious disease agents is used for epidemiological investigations, disease tracking and assessing emerging biological threats. Yet, there are challenges in collating and re-using it. Data may be derived from multiple sources, generated and collected for different purposes. While public sector data should be open access, providers from public health settings or from agriculture, food or environment sources have sensitivity criteria to meet with ethical restrictions in how the data can be reused. Yet, sharable datasets need to describe the pathogens with sufficient contextual metadata for maximal utility, e.g. associated disease or disease potential and the pathogen source. As data comprises the physical resources of pathogen collections and potentially associated sequences, there is an added emerging technical issue of integration of 'omics 'big data'. Thus, there is a need to identify suitable means to integrate and safely access diverse data for pathogens. Established genomics alliances and platforms interpret and meet the challenges in different ways depending on their own context. Nonetheless, their templates and frameworks provide a solution for adaption to pathogen datasets.