Abstract

In the asymmetric unit, equalling the unit cell (triclinic, P1, Z = 1), two mol-ecules of the title compound, 8-(4-methyl-phen-yl)-d-2'-de-oxy-adenosine, C17H19N5O3, are present, with distinct conformations of the two sugar moieties, together with one solvent water mol-ecule. All three ribose O atoms are involved in hydrogen bonding and the crystal packing is largely determined by hydrogen-bonding or hydrogen-heteroatom inter-actions (O-H⋯O, O-H⋯N, N-H⋯O, C-H⋯O and C-H⋯N) with one independent mol-ecule directly linked to four neighbouring mol-ecules and the other mol-ecule directly linked to six neighbouring mol-ecules. The two independent mol-ecules of the asymmetric unit display three weak intra-molecular C-H-to-heteroatom contacts, two of which are very similar despite the different conformations of the deoxyribosyl moieties. The aromatic ring systems of both mol-ecules are in proximity to each other and somehow aligned, though not coplanar. The absolute structures of the two mol-ecules were assumed with reference to the reactant 8-bromo-d-2'-de-oxy-adenosine as they could not be determined crystallographically.

Highlights

  • In the asymmetric unit, equalling the unit cell, two molecules of the title compound, 8-(4-methylphenyl)-d-20-deoxyadenosine, C17H19N5O3, are present, with distinct conformations of the two sugar moieties, together with one solvent water molecule

  • All three ribose O atoms are involved in hydrogen bonding and the crystal packing is largely determined by hydrogen-bonding or hydrogen–heteroatom interactions (O—HÁ Á ÁO, O—HÁ Á ÁN, N—HÁ Á ÁO, C— HÁ Á ÁO and C—HÁ Á ÁN) with one independent molecule directly linked to four neighbouring molecules and the other molecule directly linked to six neighbouring molecules

  • The two independent molecules of the asymmetric unit display three weak intramolecular C—H-to-heteroatom contacts, two of which are very similar despite the different conformations of the deoxyribosyl moieties

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Summary

Chemical context

Alkenyl or alkynyl modified purines are known for having interesting biological activities. Many of these modified nucleosides show, for instance, potential for/activity as drug candidates, biological probes etc (Manfredini et al, 1995). Fluorescent nucleosides might be employed as probes for studying the impact of changes in the biological environment: DNA damage, drug–DNA or protein–DNA interactions for instance. Such DNA probes are relevant for both chemical biologists as well as bio-organic chemists (Tanpure et al, 2013). The synthesis and crystal structure of the title compound, 8-(4-methylphenyl)-d-20-deoxyadenosine are presented here as part of our studies in this regard

Structural commentary
Ardhapure et al 2C17H19N5O3ÁH2O
Supramolecular features
Synthesis and crystallization
Refinement
Full Text
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