Abstract

Calcium-mediated signaling through inositol 1,4,5-triphosphate receptors (IP3Rs) is essential for the regulation of numerous physiological processes, including fertilization, muscle contraction, apoptosis, secretion, and synaptic plasticity. Deregulation of IP3Rs leads to pathological calcium signaling and is implicated in many common diseases, including cancer and neurodegenerative, autoimmune, and metabolic diseases. Revealing the mechanism of activation and inhibition of this ion channel will be critical to an improved understanding of the biological processes that are controlled by IP3Rs. Here, we report structural findings of the human type-3 IP3R (IP3R-3) obtained by cryo-EM (at an overall resolution of 3.8 Å), revealing an unanticipated regulatory mechanism where a loop distantly located in the primary sequence occupies the IP3-binding site and competitively inhibits IP3 binding. We propose that this inhibitory mechanism must differ qualitatively among IP3R subtypes because of their diverse loop sequences, potentially serving as a key molecular determinant of subtype-specific calcium signaling in IP3Rs. In summary, our structural characterization of human IP3R-3 provides critical insights into the mechanistic function of IP3Rs and into subtype-specific regulation of these important calcium-regulatory channels.

Highlights

  • Calcium-mediated signaling through inositol 1,4,5-triphosphate receptors (IP3Rs) is essential for the regulation of numerous physiological processes, including fertilization, muscle contraction, apoptosis, secretion, and synaptic plasticity

  • We propose that this inhibitory mechanism must differ qualitatively among IP3R subtypes because of their diverse loop sequences, potentially serving as a key molecular determinant of subtype-specific calcium signaling in IP3Rs

  • The overall structure of the human IP3R-3 (hIP3R-3) expressed in Sf9 cells is consistent with the structures of hIP3R-3 expressed in HEK GnTI(Ϫ) cells, and very similar to the structure of rat IP3R-1 purified from native tissues [18, 26, 27]

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Summary

ARTICLE cro

We report structural findings of the human type-3 IP3R (IP3R-3) obtained by cryo-EM (at an overall resolution of 3.8 Å), revealing an unanticipated regulatory mechanism where a loop distantly located in the primary sequence occupies the IP3-binding site and competitively inhibits IP3 binding We propose that this inhibitory mechanism must differ qualitatively among IP3R subtypes because of their diverse loop sequences, potentially serving as a key molecular determinant of subtype-specific calcium signaling in IP3Rs. In summary, our structural characterization of human IP3R-3 provides critical insights into the mechanistic function of IP3Rs and into subtype-specific regulation of these important calcium-regulatory channels. Receptor activity is tightly controlled by many factors including second messengers (e.g. IP3, Ca2ϩ), other small molecules (e.g. ATP), modulatory proteins, and posttranslational modifications such as phosphorylation and MST, microscale thermophoresis; RyR-1, rabbit type-1 ryanodine receptors; ␤-ME, ␤-mercaptoethanol; GDN, glyco-diosgenin; LMN, lauryl maltose neopentyl glycol; TCEP, tris(2-carboxyethyl)phosphine; SEC, size exclusion chromatography; ITC, isothermal titration calorimetry; r.m.s. deviation, root mean square deviation Our structural characterization of the hIP3R-3 provides novel insight into the mechanistic function of IP3Rs

Results
Molar ratio
Transmembrane domain
Discussion
Experimental procedures
Model building
Data and software availability
Full Text
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