Abstract

Vitamin K epoxide reductase complex subunit 1 (VKORC1) reduces vitamin K epoxide in the vitamin K cycle for post-translational modification of proteins that are involved in a variety of biological functions. However, the physiological function of VKORC1-like 1 (VKORC1L1), a paralogous enzyme sharing about 50% protein identity with VKORC1, is unknown. Here we determined the structural and functional differences of these two enzymes using fluorescence protease protection (FPP) assay and an in vivo cell-based activity assay. We show that in vivo VKORC1L1 reduces vitamin K epoxide to support vitamin K-dependent carboxylation as efficiently as does VKORC1. However, FPP assays show that unlike VKORC1, VKORC1L1 is a four-transmembrane domain protein with both its termini located in the cytoplasm. Moreover, the conserved loop cysteines, which are not required for VKORC1 activity, are essential for VKORC1L1's active site regeneration. Results from domain exchanges between VKORC1L1 and VKORC1 suggest that it is VKORC1L1's overall structure that uniquely allows for active site regeneration by the conserved loop cysteines. Intermediate disulfide trapping results confirmed an intra-molecular electron transfer pathway for VKORC1L1's active site reduction. Our results allow us to propose a concerted action of the four conserved cysteines of VKORC1L1 for active site regeneration; the second loop cysteine, Cys-58, attacks the active site disulfide, forming an intermediate disulfide with Cys-139; the first loop cysteine, Cys-50, attacks the intermediate disulfide resulting in active site reduction. The different membrane topologies and reaction mechanisms between VKORC1L1 and VKORC1 suggest that these two proteins might have different physiological functions.

Highlights

  • The structure and the physiological function(s) of vitamin K epoxide reductase complex subunit 1-like 1 (VKORC1L1) are unknown

  • Two programs (PolyPhobius and Phobius) predict three transmembrane domain (TMD) in VKORC1L1. All these programs predict that the C terminus of VKORC1L1 is located in the cytoplasm, which is significant, since the reliability of topology predictions is greatly increased if different prediction methods give the same prediction [39]

  • The prediction program TOPCONS, which is based on five different topology prediction methods, performs better than other programs [40]; like most of the programs, TOPCONS predicts that VKORC1L1 is a 4-TMD membrane protein with both the N terminus and the C terminus located in the cytoplasm

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Summary

Background

The structure and the physiological function(s) of vitamin K epoxide reductase complex subunit 1-like 1 (VKORC1L1) are unknown. It has been shown that the conserved loop cysteines in bacterial VKORHs shuttle electrons to the disulfide-bonded CXXC active site through an intra-molecular electron transfer pathway, similar to that of DsbB [25, 26] This mechanism has been extended to human VKORC1 (26 –28). To better understand the structure-function relationships that define VKORC1L1 activity, we report here: 1) the membrane topology of VKORC1L1, determined using a fluorescence protease protection (FPP) assay in live mammalian cells; 2) the role of VKORC1L1’s conserved loop cysteines in KO reduction, using our recently established cell-based activity assay [35]; 3) a possible mechanism for VKORC1L1’s active site regeneration by the conserved loop cysteines. Our results show that VKORC1L1 has a different membrane topology and reaction mechanism than that of VKORC1

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