Abstract

In the polymicrobial environment of the human nasopharynx, Streptococcus pneumoniae (pneumococcus) competes with other members of the microbial community for limited nutrients in part by secreting small peptide bacteriocins called pneumocins. Pneumocin production is controlled by a quorum sensing system encoded by the blp locus. Although the locus is found in all pneumococci, there is significant variability in the repertoire of pneumocins and associated immunity proteins encoded in the Bacteriocin Immunity Region (BIR) and in the presence or absence of a functional Blp transporter. Strains without an active Blp transporter are inactive in plate overlay assays and rely on a homologous transporter that is only produced during brief periods of competence to stimulate the blp locus and secrete pneumocins. The variability of the locus suggests that selective pressure is influencing the content to promote the optimal competitive environment. Much of the variability in the blp locus has been described at the genome level; the phenotypic activity attributable to the various BIR genes has not been fully described. To examine the role of the predicted pneumocin peptides in competition, 454 isolates were screened for competence independent blp pheromone secretion using plate assays. Active strains were characterized for inhibition, BIR content, BlpC pherotype and serotype. Deletion analysis on inhibitory strains demonstrated that BlpI and BlpJ peptides function as a two-peptide bacteriocin and that BlpIJ immunity is encoded by the co-transcribed blpU4/5 genes. BlpIJ secretion promotes inhibitory activity against the majority of pneumococcal isolates when expressed in a Blp transporter intact background. Intermediate levels of competition in biofilms were noted when BlpIJ containing strains carried the non-functional Blp transporter. Based on genome data, the combination of BlpIJ in a Blp transporter intact strain is surprisingly rare, despite clear advantages during colonization and biofilm growth. In contrast, we show that the blpK/pncF operon encoding the single-peptide pneumocin BlpK and its immunity protein is found in the majority of isolates. Unlike, BlpIJ and BlpK were shown to promote a limited spectrum of inhibition due in part to immunity that is independent of activation of the blp locus.

Highlights

  • Streptococcus pneumoniae is a member of the human nasopharyngeal microbial community that can cause a wide spectrum of local and disseminated disease when mucosal barriers are breached

  • We show that BlpIJ function as a two-peptide bacteriocin that is associated with potent anti-pneumococcal inhibition

  • To characterize active pneumocin production locus in the disease-causing and colonizing Streptococcus pneumoniae population, we screened 454 isolates from three collections: (1) 22 distinct isolates isolated from the nasopharynx of daycare attending children in the pre-PCV7 era (St Sauver et al, 2000), (2) 381 clinical isolates that were identified as pneumococcus in the microbiology laboratory at the University of Michigan Health System during a period between 2004 and 2006, (3) 51 previously described colonizing and invasive isolates from South Africa (Son et al, 2011)

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Summary

Introduction

Streptococcus pneumoniae (pneumococcus) is a member of the human nasopharyngeal microbial community that can cause a wide spectrum of local and disseminated disease when mucosal barriers are breached. Pneumococcal colonization is established during infancy and peaks in daycare age children (Teo et al, 2015; Bosch et al, 2017; Kelly et al, 2017). To survive in this polymicrobial environment and to compete for limited nutrients provided by the host, pneumococcus must actively compete with other members of the microbiome. One means of competition is through the secretion of bacteriocins, small antimicrobial peptides that typically target other closely related bacteria by disrupting either cell wall formation or membrane integrity. Bacteriocin production is typically tightly regulated presumably to ensure that the peptides are only made under advantageous conditions (Nes et al, 1996; Wescombe et al, 2006; Cornforth and Foster, 2013; Maricic et al, 2016; Wholey et al, 2016; Shanker and Federle, 2017)

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