Abstract
Background: Biocuration involves a variety of teams and individuals across the globe.However, they may not self-identify as biocurators, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. The lack of a clear, up-to-date profile of biocuration creates challenges for organisations like ELIXIR, the ISB and GOBLET to systematically support biocurators and for biocurators themselves to develop their own careers. Therefore, the ELIXIR Training Platform launched an Implementation Study in order to i) identify communities of biocurators, ii) map the type of curation work being done, iii) assess biocuration training, and iv) draw a picture of biocuration career development. Methods: To achieve the goals of the study, we carried out a global survey on the nature of biocuration work, the tools and resources that are used, training that has been received and additional training needs. To examine these topics in more detail we ran workshop-based discussions at ISB Biocuration Conference 2019 and the ELIXIR All Hands Meeting 2019. We also had guided conversations with selected people from the EMBL-European Bioinformatics Institute. Results: The study illustrates that biocurators have diverse job titles, are highly skilled, perform a variety of activities and use a wide range of tools and resources. The study emphasises the need for training in programming and coding skills, but also highlights the difficulties curators face in terms of career development and community building. Conclusion: Biocurators themselves, as well as organisations like ELIXIR, GOBLET and ISB must work together towards structural change to overcome these difficulties. In this article we discuss recommendations to ensure that biocuration as a role is visible and valued, thereby helping biocurators to proceed with their career.
Highlights
Together with bioinformatics, curated databases have become an essential part of modern molecular biology
In this research article we describe the outcomes of an ELIXIR Biocuration Implementation Study that aims to i) identify communities of biocurators within ELIXIR and worldwide, ii) review and map the kind of biocuration work being done, for which databases and life science/health domains, iii) assess the capacity requirements for new biocurators and training provision available, and iv) draw a picture of the biocuration career development
Biocuration activities have a vital role in the life science data ecosystem, but are often undervalued
Summary
Together with bioinformatics, curated databases have become an essential part of modern molecular biology Databases such as Ensembl[1], COSMIC2 and PomBase[3] are accessed daily by thousands of people worldwide, illustrating that well-structured life science data, available to all in public repositories, are fundamental to research. Methods: To achieve the goals of the study, we carried out a global survey on the nature of biocuration work, the tools and resources that are used, training that has been received and additional training needs. To examine these topics in more detail we ran workshop-based discussions at ISB Biocuration Conference 2019 and the ELIXIR All Hands Meeting 2019. In this article we discuss recommendations to ensure that biocuration as a role is visible and valued, thereby helping biocurators to proceed with their career
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