Abstract

Proliferating cell nuclear antigen (PCNA) is essential for the organization of DNA replication and the bypass of DNA lesions via translesion synthesis (TLS). TLS is mediated by specialized DNA polymerases, which all interact, directly or indirectly, with PCNA. How interactions between the TLS polymerases and PCNA affects TLS specificity and/or coordination is not fully understood. Here we show that the catalytic subunit of the essential mammalian TLS polymerase POLζ, REV3L, contains a functional AlkB homolog 2 PCNA interacting motif, APIM. APIM from REV3L fused to YFP, and full-length REV3L-YFP colocalizes with PCNA in replication foci. Colocalization of REV3L-YFP with PCNA is strongly reduced when an APIM-CFP construct is overexpressed. We also found that overexpression of full-length REV3L with mutated APIM leads to significantly altered mutation frequencies and mutation spectra, when compared to overexpression of full-length REV3L wild-type (WT) protein in multiple cell lines. Altogether, these data suggest that APIM is a functional PCNA-interacting motif in REV3L, and that the APIM-mediated PCNA interaction is important for the function and specificity of POLζ in TLS. Finally, a PCNA-targeting cell-penetrating peptide, containing APIM, reduced the mutation frequencies and changed the mutation spectra in several cell lines, suggesting that efficient TLS requires coordination mediated by interactions with PCNA.

Highlights

  • DNA damage is continuously induced by exogenous and endogenous sources

  • When the replication fork encounters a DNA lesion, mono-ubiquitination of Proliferating cell nuclear antigen (PCNA) is suggested to be important for mediating a polymerase switch, from the replicative polymerase to a translesion DNA synthesis (TLS) polymerase, which is able to synthesize over the lesion

  • We examined the in vivo properties of overexpressed full-length REV3L, and the functionality of AlkB homolog PCNA interacting motif (APIM) found in the predicted unstructured region of REV3L

Read more

Summary

Introduction

DNA damage is continuously induced by exogenous and endogenous sources. If not repaired prior to replication, these may result in replication fork collapse, strand breaks, cell death, or genomic instability. The POLζ complex (here called POLζ consists of four subunits; REV3L, REV7, p50 (POLD2), and p66 (POLD3) [10] The latter two are shared with the lagging strand replicative polymerase, POLδ. POLη, POLι and POLκ contain the PIP-box, and interact directly with PCNA [1], but still they are dependent on REV1 for replicating over UV lesions [16]. How exactly the most appropriate TLS polymerase is selected when needed likely depends both on the type of DNA lesion and on their ability to interact with their two main hub proteins, REV1 and PCNA. We found that an APIM-containing cell-penetrating peptide (APIM-peptide) targeting PCNA [6,17] reduced the mutation frequency more in the isogenic normal cell line than in POLζ-mutated cells This data supports a role of APIM–PCNA interactions in TLS, and in POLζ-mediated TLS

Results and Discussion
Mutation of APIM in REV3L Affects the Mutation Frequency
Mutation of APIM in REV3L Affects the Mutation Spectra in Four Cell Lines
Targeting PCNA with APIM-Containing Peptides Reduce the Mutation Frequency
Targeting PCNA with APIM-Peptide Affects the Mutation Spectra
Expression Constructs
Cell Lines
SupF Assay
Imaging
Preparation of Cell Lysates
Immunoprecipitation
Guide RNA Cloning
3.11. Viability
Full Text
Published version (Free)

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call