Abstract
The question whether new genetic modification techniques (nGM) in plant development might result in non-negligible negative effects for the environment and/or health is significant for the discussion concerning their regulation. However, current knowledge to address this issue is limited for most nGMs, particularly for recently developed nGMs, like genome editing, and their newly emerging variations, e.g., base editing. This leads to uncertainties regarding the risk/safety-status of plants which are developed with a broad range of different nGMs, especially genome editing, and other nGMs such as cisgenesis, transgrafting, haploid induction or reverse breeding. A literature survey was conducted to identify plants developed by nGMs which are relevant for future agricultural use. Such nGM plants were analyzed for hazards associated either (i) with their developed traits and their use or (ii) with unintended changes resulting from the nGMs or other methods applied during breeding. Several traits are likely to become particularly relevant in the future for nGM plants, namely herbicide resistance (HR), resistance to different plant pathogens as well as modified composition, morphology, fitness (e.g., increased resistance to cold/frost, drought, or salinity) or modified reproductive characteristics. Some traits such as resistance to certain herbicides are already known from existing GM crops and their previous assessments identified issues of concern and/or risks, such as the development of herbicide resistant weeds. Other traits in nGM plants are novel; meaning they are not present in agricultural plants currently cultivated with a history of safe use, and their underlying physiological mechanisms are not yet sufficiently elucidated. Characteristics of some genome editing applications, e.g., the small extent of genomic sequence change and their higher targeting efficiency, i.e., precision, cannot be considered an indication of safety per se, especially in relation to novel traits created by such modifications. All nGMs considered here can result in unintended changes of different types and frequencies. However, the rapid development of nGM plants can compromise the detection and elimination of unintended effects. Thus, a case-specific premarket risk assessment should be conducted for nGM plants, including an appropriate molecular characterization to identify unintended changes and/or confirm the absence of unwanted transgenic sequences.
Highlights
A wide range of new genetic modification techniques, which are collectively referred to as “new techniques” or NTs in short, has been developed to modify plants for research purposes or for the development of crops (Lusser et al, 2012; Vogel, 2016; SAM, 2017). nGMs and genome editing in particular are different from conventional breeding methods and from classic genetic engineering technology and are used to produce plants with traits or a combination of traits suitable for agricultural use (Songstad et al, 2017)
The scientific literature considered in this study demonstrates that in most cases specific nGMs are not used in isolation, but various biotechnological methods are combined in the different breeding processes to establish nGM applications
With respect to intended traits three categories of nGM plants can be distinguished: (1) nGM plants with traits and usage known from conventional approaches and without adverse effects
Summary
A wide range of new genetic modification techniques (nGM), which are collectively referred to as “new techniques” or NTs in short, has been developed to modify plants for research purposes or for the development of crops (Lusser et al, 2012; Vogel, 2016; SAM, 2017). nGMs and genome editing in particular are different from conventional breeding methods and from classic genetic engineering technology and are used to produce plants with traits or a combination of traits suitable for agricultural use (Songstad et al, 2017). A small number of publications addressed the use of emerging variants of CRISPR-based systems, e.g., the use of modified or alternative CRISPR-type nucleases like Cpf (4) (Kim et al, 2017; Tang et al, 2017; Xu et al, 2017; Yin et al, 2017), as well as the use of modified Cas nucleases, e.g., as single strand nickases (2) (Schiml et al, 2014; Mikami et al, 2016) or for targeted base-editing (4) (e.g., Shimatani et al, 2017; Zong et al, 2017) This underlines the interest in the development of variants of CRISPR-based systems with increased specificity of targeting or approaches for introducing specific types of mutations at specific genomic locations, e.g., via chemical modification of specific nucleotides present in the targeted genomic sequences (Komor et al, 2016, 2017; Schaeffer and Nakata, 2016; Arora and Narula, 2017).
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