Abstract
Colorectal cancer can be grouped into Dukes A, B, C, and D stages based on its developments. Generally speaking, more advanced patients have poorer prognosis. To integrate progression stage prediction systems with recurrence prediction systems, we proposed an ensemble prognostic model for colorectal cancer. In this model, each patient was assigned a most possible stage and a most possible recurrence status. If a patient was predicted to be recurrence patient in advanced stage, he would be classified into high risk group. The ensemble model considered both progression stages and recurrence status. High risk patients and low risk patients predicted by the ensemble model had a significant different disease free survival (log-rank test p-value, 0.0016) and disease specific survival (log-rank test p-value, 0.0041). The ensemble model can better distinguish the high risk and low risk patients than the stage prediction model and the recurrence prediction model alone. This method could be applied to the studies of other diseases and it could significantly improve the prediction performance by ensembling heterogeneous information.
Highlights
Colorectal cancer (CRC) is one of the most malignant cancers
On the basis of the outputs of Minimum Redundancy Maximal Relevance (mRMR), we constructed 500 feature subsets according to Eq
25 CRC stage related candidate genes In this study, we identified 25 candidate genes that can be used to distinguish CRC patients from different stages
Summary
Colorectal cancer (CRC) is one of the most malignant cancers. Its occurrence and progression involve complicated evolutionary process affected by multiple genes [1]. In America and Europe, CRC is the second most frequent cancer which leads to death ranking below lung cancer [2]. Dukes’ A carcinomas are those confined to the innermost lining of the colon or rectum with no invading into the extrarectal tissues and no metastases in lymph nodes. Dukes’ B carcinomas are those that have invaded the musculature of the colon or rectum but have not yet involved the lymphatic system. Type B1 carcinomas were those in which lesions have invaded into the muscularis propria with negative nodes, but without penetrating through. While type B2 carcinomas were those in which lesions have penetrated the muscularis propria with negative nodes. Carcinomas of type C1 have invaded into muscularis propria with positive nodes but have not penetrated through. The intermediate stages B and C are not so useful in discriminating good prognosis patients from poor ones [6]
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