Abstract

Illumina's Nextera Tn5 transposase-based tagging-and-fragmentation (“tagmentation”) workflow has become one of the most widely used next-generation DNA-sequencing (NGS) protocols. However, enzymatic fragmentation of DNA, including transposase-mediated insertion reactions, is never completely free of sequence specificity. Such intrinsic sequence-fragmentation biases can distort apparent locus copy numbers in the final assembled genome, potentially in combination with additional sequence-dependent effects arising in DNA-amplification steps.

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