Abstract

Inhibitor of growth 3 (ING3) is one of five members of the ING tumour suppressor family, characterized by a highly conserved plant homeodomain (PHD) as a reader of the histone mark H3K4me3. ING3 was reported to act as a tumour suppressor in many different cancer types to regulate apoptosis. On the other hand, ING3 levels positively correlate with poor survival prognosis of prostate cancer (PCa) patients. In PCa cells, ING3 acts rather as an androgen receptor (AR) co-activator and harbours oncogenic properties in PCa. Here, we show the identification of a novel ING3 splice variant in both the human PCa cell line LNCaP and in human PCa patient specimen. The novel ING3 splice variant lacks exon 11, ING3∆ex11, which results in deletion of the PHD, providing a unique opportunity to analyse functionally the PHD of ING3 by a natural splice variant. Functionally, overexpression of ING3Δex11 induced morphological changes of LNCaP-derived 3D spheroids with generation of lumen and pore-like structures within spheroids. Since these structures are an indicator of epithelial–mesenchymal transition (EMT), key regulatory factors and markers for EMT were analysed. The data suggest that in contrast to ING3, ING3Δex11 specifically modulates the expression of key EMT-regulating upstream transcription factors and induces the expression of EMT markers, indicating that the PHD of ING3 inhibits EMT. In line with this, ING3 knockdown also induced the expression of EMT markers, confirming the impact of ING3 on EMT regulation. Further, ING3 knockdown induced cellular senescence via a pathway leading to cell cycle arrest, indicating an oncogenic role for ING3 in PCa. Thus, the data suggest that the ING3Δex11 splice variant lacking functional PHD exhibits oncogenic characteristics through triggering EMT in PCa cells.

Highlights

  • The inhibitor of growth (ING) gene family compromises five protein-coding members, ING1 to ING5, and the pseudogene INGX

  • Sequencing indicated that the smaller PCR products lack the exon 11, indicating an alternative splice variant of Inhibitor of growth 3 (ING3), termed ING3∆ex11 (Figure 1C)

  • The skipping of exon 11 causes an in-frame deletion of 39 nucleotides resulting in loss of 13 amino acids within the highly conserved plant homeodomain (PHD) of the ING family members

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Summary

A Novel Splice Variant of the Inhibitor of Growth 3 Lacks the

Anna Melekhova 1,† , Mirjam Leeder 2,† , Thanakorn Pungsrinont 1 , Tim Schmäche 1,3,4 , Julia Kallenbach 1 , Marzieh Ehsani 1 , Kimia Mirzakhani 1 , Seyed Mohammad Mahdi Rasa 5 , Francesco Neri 5 and. National Center for Tumor Diseases (NCT/UCC), 01307 Dresden, Germany; German Cancer Research. Center (DKFZ), Heidelberg, Germany; Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany; Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany.

Introduction
Results
Identification ofofa primers novel ING3 splice variant lacking
The Knockdown of ING3 Induces EMT
Knockdown
Materials and Methods
Generation and Analyses of 3D Spheroids
Antibodies and Western Blot Analyses
ING3 Structure Predictions
Statistical Analysis
Full Text
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