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Abstract
Background(1,3;1,4)-β-Glucan is an important component of the cell walls of barley grain as it affects processability during the production of alcoholic beverages and has significant human health benefits when consumed above recommended threshold levels. This leads to diametrically opposed quality requirements for different applications as low levels of (1,3;1,4)-β-glucan are required for brewing and distilling and high levels for positive impacts on human health.ResultsWe quantified grain (1,3;1,4)-β-glucan content in a collection of 399 2-row Spring-type, and 204 2-row Winter-type elite barley cultivars originating mainly from north western Europe. We combined these data with genotypic information derived using a 9 K Illumina iSelect SNP platform and subsequently carried out a Genome Wide Association Scan (GWAS). Statistical analysis accounting for residual genetic structure within the germplasm collection allowed us to identify significant associations between molecular markers and the phenotypic data. By anchoring the regions that contain these associations to the barley genome assembly we catalogued genes underlying the associations. Based on gene annotations and transcript abundance data we identified candidate genes.ConclusionsWe show that a region of the genome on chromosome 2 containing a cluster of CELLULOSE SYNTHASE-LIKE (Csl) genes, including CslF3, CslF4, CslF8, CslF10, CslF12 and CslH, as well as a region on chromosome 1H containing CslF9, are associated with the phenotype in this germplasm. We also observed that several regions identified by GWAS contain glycoside hydrolases that are possibly involved in (1,3;1,4)-β-glucan breakdown, together with other genes that might participate in (1,3;1,4)-β-glucan synthesis, re-modelling or regulation. This analysis provides new opportunities for understanding the genes related to the regulation of (1,3;1,4)-β-glucan content in cereal grains.Electronic supplementary materialThe online version of this article (doi:10.1186/1471-2164-15-907) contains supplementary material, which is available to authorized users.
Highlights
Non-cellulosic polysaccharides from the cell walls of cereal grains are not digested by enzymes resident in the human small intestine, they contribute to total dietary fibre intake [1]
The CslF gene family is comprised of ten members [14] and is part of the CELLULOSE SYNTHASE gene superfamily that is responsible for the synthesis of several plant cell wall polysaccharides [15]
Using a collection of both Springand Winter-type contemporary barley cultivars, largely originating from north-western Europe, combined with a densely populated SNP marker platform [27], we show that Genome Wide Association Scan (GWAS) resolves previously identified QTL with increased precision, and highlights additional genetic regions and candidate genes for follow-up experiments
Summary
Non-cellulosic polysaccharides from the cell walls of cereal grains are not digested by enzymes resident in the human small intestine, they contribute to total dietary fibre intake [1]. The effectiveness of non-cellulosic cell wall polysaccharides, including (1,3;1,4)-β-glucans, in improving health outcomes is related to their levels in grain, to their fine structures, and to their associated physicochemical properties. The CslF gene family is comprised of ten members [14] and is part of the CELLULOSE SYNTHASE gene superfamily that is responsible for the synthesis of several plant cell wall polysaccharides [15]. Variation between individual members of the CslF and CslH gene families and/ or the genes that regulate them (directly or indirectly) control the relative abundance and fine structure of (1,3;1,4)-β-glucans in both the grain and the rest of the plant [16]. There, endosperm cell walls are extremely thick, the (1,3;1,4)-β-glucan content of the grain is over 40% by weight and the starch content commensurately lower, at about 6% [20]
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