Abstract
Prokaryotic communities play key roles in biogeochemical transformation and cycling of nutrients in the productive mangrove ecosystem. In this study, the vertical distribution of rhizosphere bacteria was evaluated by profiling the bacterial diversity and community structure in the rhizospheres of four mangrove species (Sonneratia alba, Rhizophora mucronata, Ceriops tagal and Avicennia marina) from Mida Creek and Gazi Bay, Kenya, using DNA-metabarcoding. Alpha diversity was not significantly different between sites, but, significantly higher in the rhizospheres of S. alba and R. mucronata in Gazi Bay than in Mida Creek. Chemical parameters of the mangrove sediments significantly correlated inversely with alpha diversity metrics. The bacterial community structure was significantly differentiated by geographical location, mangrove species and sampling depth, however, differences in mangrove species and sediment chemical parameters explained more the variation in bacterial community structure. Proteobacteria (mainly Deltaproteobacteria and Gammaproteobacteria) was the dominant phylum while the families Desulfobacteraceae, Pirellulaceae and Syntrophobacteraceae were dominant in both study sites and across all mangrove species. Constrained redundancy analysis indicated that calcium, potassium, magnesium, electrical conductivity, pH, nitrogen, sodium, carbon and salinity contributed significantly to the species-environment relationship. Predicted functional profiling using PICRUSt2 revealed that pathways for sulfur and carbon metabolism were significantly enriched in Gazi Bay than Mida Creek. Overall, the results indicate that bacterial community composition and their potential function are influenced by mangrove species and a fluctuating influx of nutrients in the mangrove ecosystems of Gazi Bay and Mida Creek.
Highlights
Mangroves are coastal wetland forests mainly found at the intertidal zones of estuaries, brackish waters, deltas, creeks, lagoons, marshes and mudflats of tropical and subtropical latitudes [1]
A total of 3,038,718 sequence reads were obtained from the 64 mangrove rhizosphere samples, out of which 189,254 high-quality 16S rRNA sequence reads were clustered into 4,295 Operational Taxonomic Units (OTUs)
The rarefication of counts to 1,126 reads per-sample was sufficient for explaining differences in bacterial diversity (S1 Fig)
Summary
Mangroves are coastal wetland forests mainly found at the intertidal zones of estuaries, brackish waters, deltas, creeks, lagoons, marshes and mudflats of tropical and subtropical latitudes [1]. The mangrove ecosystems provide important ecological and economic functions, including protecting coastlines from storm damage and erosion, degrading environmental contaminants, and providing nursery habitats for numerous aquatic organisms [4]. They form an enormous food web, providing a myriad of microorganisms with nutrients [5]. Complex interactions of the microbes in plant ecosystems maintain the harmony of different biogeochemical processes and sustain the nutritional status and ecological balance [8] Special environmental conditions such as high salinity, high sulfur and low oxygen, drives the proliferation of unique microorganisms that contribute to sulfate reduction, methane cycling and ammonia oxidation within mangrove sediments [9]. It is important to understand the bacterial structure and species composition underlining mangrove sediments, within the rhizospheres of specific mangrove species
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