Zealand Sea Lions Research Articles

Occurrences and activities of New Zealand sea lions Phocarctos hookeri at non-natal Macquarie Island (1965–1980)

ABSTRACT The distribution of New Zealand sea lions is typically localised to New Zealand and its remote subantarctic islands. However, non-resident male sea lions were seen on Macquarie Island, 650 km from their nearest natal islands, in all months of all years from 1965 to 1980. The majority of the apparently opportunistic sightings were at the northern end of the island. Sightings increased from May to a September-October peak that was coincident with the cessation of breeding activities in the sea lions’ natal range and the period when resident gentoo and royal penguins, and fur and elephant seals aggregated for breeding, all of which are now confirmed prey for New Zealand sea lions on Macquarie Island. The long-term effect of predation pressure from New Zealand sea lions on resident species remains unmeasured. After sleeping, interacting with southern elephant seals was a core sea lion activity. Predation on seabirds and interactions with elephant seals increase the risk of cross-species disease transmission.

The benthic-pelagic continuum: Age class and sex differences in the use of the vertical dimension by a rare pinniped.

Sea lions as a group, display strong site fidelity, and varying degrees of vulnerability to environmental change, disease and fisheries interactions. One of the rarest pinnipeds, the New Zealand sea lion (NZSL, Phocarctos hookeri) has a very restricted breeding range. At Campbell Island/Motu Ihupuku, one of the two primary breeding sites, at-sea foraging behaviour is unknown. We hypothesised that NZSL of various sex and age classes would utilise the water column differently due to differing physiological constraints and therefore have different accessibility to prey resources. We tested whether sea lion diving behaviour varied in relation to (i) age and sex class, (ii) time of day and (iii) water depth. We also hypothesised that the proportion of benthic/pelagic diving, and consequently risk of fisheries interaction, would vary in relation to age and sex. Satellite telemetry tags were deployed on 25 NZSL from a range of age/sex classes recording dive depth, duration and location. Adult females and juveniles used inshore, benthic habitats, while sub-adult males also utilised benthic habitats, they predominantly used pelagic habitat at greater distances from the island. Adult females and juveniles exhibited shorter dives than the same age/sex classes at the Auckland Islands, suggesting a lower dive effort for these age/sex classes at Campbell Island/Motu Ihupuku. Adult females dived more frequently than other age/sex classes, likely operating closer to their physiological limits; however, further data for this age class is needed. Sub-adult male use of pelagic prey may increase their exposure to mid-water trawls; however, further research detailing the degree of spatial overlap with fisheries is required. This study highlights the utility of spatially explicit dive data to predict vertical habitat use, niche separation of various age and sex classes of marine predators and attribute potential fisheries interaction risk in relation to predator habitat use.

Whisker stable isotope analysis used for proactive management of recolonising New Zealand sea lion population

New Zealand sea lions Phocarctos hookeri have experienced a 46% decline in pup production in the last 25 yr, driven by female deaths in trawl fisheries around the Auckland Islands. The only colony for this species recorded away from the subantarctics and this fishing impact is on Stewart Island. Despite the Stewart Island colony only being 1% of the species, it is significant, as it is currently the only stable population and is located in an area away from most on-land human impacts, although not away from potential fisheries pressures. To ensure this colony’s persistence, more information is needed on these sea lions’ diet, foraging behaviour, and local fisheries interactions for management that promotes their protection. The present research investigates the long-term foraging behaviour, and infers the diet, of female New Zealand sea lions on Stewart Island using their known foraging behaviour and linking this to their proximal and full-length whisker stable isotope values. Previous foraging studies found that these animals have small foraging areas with consistent mesopelagic diving behaviours. These behaviours, linked with their whisker stable isotope values, show consistency in foraging behaviour and inferred diet across their entire adult life. Currently, there are no known commercial fisheries bycatch issues for sea lions around Stewart Island. However, precautionary measures ensuring fisheries pressure does not increase and management to safeguard that deepwater trawling and finfish aquaculture remain absent would be proactive steps that should be undertaken for the protection of this new colony and for this Endangered species as a whole.

Home ranges and diving behavior of endangered New Zealand sea lions along the Catlins coast of South Island, New Zealand

AbstractNew Zealand sea lions (NZSL, Phocarctos hookeri) were extirpated from mainland New Zealand during pre‐European subsistence hunting. They began reoccupying South Island in 1994, and the newest breeding colony arose in 2006 along the Catlins Coast on southeastern South Island and currently consists of <10 individuals. The goal of this study was to use animal‐borne satellite telemeters and miniature data recorders (MDRs) to determine home ranges, three‐dimensional movements, and foraging strategy of female NZSL along the Catlins Coast during the austral winter of 2019. Total home ranges were small (97 km2) and primarily restricted to nearshore areas. Dives were shallow (8.9 m), short in duration (1.4 min), and had a mean swimming speed of 1.5 m s−1. We identified three dive types based primarily on total dive duration, mean maximum depth, total distance swam, and path linearity. The estimated at‐sea metabolic rate varied among dive types because of differences in flipper stroke frequency and swim speed. Female NZSL along the Catlins Coast have smaller home ranges and make shorter foraging trips compared with females in the Auckland Islands, and suitable habitat for breeding and prey availability along the southeast coast are encouraging for future population growth.

Clinical parameters of hypervirulent Klebsiella pneumoniae disease and ivermectin treatment in New Zealand sea lion (Phocarctos hookeri) pups.

Hypervirulent Klebsiella pneumoniae infection causes significant mortality of endangered New Zealand sea lion pups at Enderby Island, Auckland Islands. Gross necropsy and histopathology findings are well reported, but little is known about the clinical course of disease in affected pups. To determine factors feasible as clinical screening tools for hypervirulent K. pneumoniae in live pups, 150 pups over two field seasons (2016–18) were recruited shortly after birth for a prospective cohort study. A randomised controlled clinical treatment trial with the anthelmintic ivermectin was conducted concurrently and risk factor data and biological samples were collected approximately fortnightly. Treatment with ivermectin has been demonstrated to reduce the risk of hypervirulent K. pneumoniae mortality in pups, so effects on clinical parameters between the treated and control cohorts were also investigated. A broader sample of pups were monitored for clinical signs to investigate the course of disease in affected pups. Clinical signs, haematology and oral and rectal swabs to detect gastrointestinal carriage of hypervirulent K. pneumoniae were not useful for detection of disease prior to death. Of those pups that died due to hypervirulent K. pneumoniae, only 26.1% (18/69) had any clinical signs prior, likely a reflection of the peracute course of disease. On comparison of haematological parameters between ivermectin-treated and control pups, significantly lower total plasma protein and higher eosinophil counts were seen in control versus treated pups, however standard length as a surrogate for age was a more important influence on parameters overall than ivermectin treatment. This study also highlighted a cohort of pups with severe clinical signs suggestive of hypervirulent K. pneumoniae infection were lost to follow up at the end of the monitored season, which could be contributing to cryptic juvenile mortality.

Integrated SDM database: Enhancing the relevance and utility of species distribution models in conservation management

Abstract Species' ranges are changing at accelerating rates. Species distribution models (SDMs) are powerful tools that help rangers and decision‐makers prepare for reintroductions, range shifts, reductions and/or expansions by predicting habitat suitability across landscapes. Yet, range‐expanding or ‐shifting species in particular face other challenges that traditional SDM procedures cannot quantify, due to large differences between a species' currently occupied range and potential future range. The realism of SDMs is thus lost and not as useful for conservation management in practice. Here, we address these challenges with an extended assessment of habitat suitability through an integrated SDM database (iSDMdb). The iSDMdb is a spatial database of predicted sites in a species' prediction range, derived from SDM results, and is a single spatial feature that contains additional, user‐friendly data fields that synthesise and summarise SDM predictions and uncertainty, human impacts, restoration features, novel preferences in novel spaces and management priorities. To illustrate its utility, we used the endangered New Zealand sea lion Phocarctos hookeri. We consulted with wildlife rangers, decision‐makers and sea lion experts to supplement SDM predictions with additional, more realistic and applicable information for management. Almost half the data fields included in this database resulted from engaging with these end‐users during our study. The SDM found 395 predicted sites. However, the iSDMdb's additional assessments showed that the actual suitability of most sites (90%) was questionable due to human impacts. >50% of sites contained unnatural barriers (fences, grazing grasslands), and 75% of sites had roads located within the species' range of inland movement. Just 5% of the predicted sites were mostly (>80%) protected. Integrating SDM results with supplemental assessments provides a way to address SDM limitations, especially for range‐expanding or ‐shifting species. SDM products for conservation applications have been critiqued for lacking transparency and interpretation support, and ineffectively communicating uncertainty. The iSDMdb addresses these issues and enhances the practical relevance and utility of SDMs for stakeholders, rangers and decision‐makers. We exemplify how to build an iSDMdb using open‐source tools, and how to make diverse, complex assessments more accessible for end‐users.

Risk Factors for New Zealand Sea Lion (Phocarctos hookeri) Pup Mortality: Ivermectin Improves Survival for Conservation Management

Septicaemia due to hypervirulent (HV) Klebsiella pneumoniae is the leading cause of neonatal pup mortality in endangered New Zealand sea lions (Phocarctos hookeri) at Enderby Island, in the New Zealand sub-Antarctic. Accounting for approximately 60% of annual pup mortality at this site following an epizootic event in 2001–02, HV K. pneumoniae is also emerging worldwide as a significant community-acquired human pathogen. To facilitate efficient direct mitigation to reduce pup mortality, a case-control study and prospective cohort study were conducted to identify risk factors amenable to active management. Additionally, to investigate impacts of hookworm (Uncinaria spp.), a nested treatment trial with the anthelmintic ivermectin was undertaken concurrently. During two austral summer field seasons (2016–2018), 698 pups were captured for treatment trial recruitment and the collection of morphometric measurements, biological samples and risk factor data. Gastrointestinal carriage of the virulent phenotype of K. pneumoniae was a consistent risk factor, while ivermectin treatment and higher body condition index consistently reduced risk of HV K. pneumoniae mortality. Significantly fewer ivermectin-treated pups were found dead (24.1% control, 11.1% treatment), with a trend towards a higher proportion of HV K. pneumoniae deaths amongst the control group. This study provides evidence to support ivermectin treatment as a pup mortality mitigation strategy in New Zealand sea lions at Enderby Island. If applied to larger colonies where HV K. pneumoniae and hookworm impact pup survival, this intervention could have population-scale benefits for this endangered species. Further work is required to understand how ivermectin prevents HV K. pneumoniae septicaemia, but removal of hookworms before intestinal mucosal damage occurs could limit systemic spread of virulent bacteria from the gastrointestinal tract.

Behavioural plasticity and population connectivity: Contributors to the establishment of new pinniped breeding colonies

Abstract Understanding the ecological and evolutionary processes that occur during range shift or (re‐)colonization is of critical importance for species whose ranges are changing due to human‐induced climate change or species such as New Zealand sea lions where their established colonies are significantly declining due to human impacts. The mechanisms underlying colonization are poorly understood. Observations are required to determine the processes that change individual's behaviour associated with colonization, but such observations are rare. Here, the establishment of a new breeding colony of New Zealand sea lions, Phocarctos hookeri, as they recolonized mainland New Zealand, an area from which they had been absent for ~200 years was investigated. There are differences in breeding location behaviour and population connectivity between established and establishing colonies of New Zealand sea lions. The recolonizing population is more dispersed with breeding locations that change annually and have more connections with other populations compared with established colonies and populations. The establishment of a new colony and the greater numbers of resightings between colonies means that for species' management, considerably more public education, habitat management, and protection is needed to ensure the safe return of New Zealand sea lions back on to mainland New Zealand.

Identifying female foraging ecotype and fisheries impacts through pup whisker stable isotopes

Abstract Individual specialization in the foraging behaviour of marine predators can affect the ecology, evolution, and ability of a population to respond to environmental variability and human impacts. Here, blood serum and whisker stable isotope values from New Zealand (NZ) sea lion pups (Phocarctos hookeri) are compared with their mother’s values to identify whether they can be used as proxies to identify their mother’s isotopic niche and foraging strategy. Female NZ sea lions have been identified, both through telemetry and stable isotope research of blood serum and whiskers, to have two distinct foraging ecotypes (mesopelagic or benthic), consistent across their adult life. Females who are mesopelagic foragers have higher overlap and a greater risk of harmful interactions with fisheries. Stable isotope analysis of adult females can be used to determine the proportion of the female population exposed to these detrimental interactions. However, the capture, restraint, and removal of a whisker or blood from an adult female NZ sea lion is an expensive, time‐consuming, and invasive undertaking. Instead, by comparing the blood serum and whisker δ13C and δ15N values of 12 NZ sea lion mother‐and‐pup pairs, for whom the foraging behaviour of the female is known, the question as to whether a pup’s blood serum or whisker isotope value can be used as a proxy to identify female foraging ecotype was investigated. The δ13C and δ15N values for the blood serum and whiskers of pups and their mothers were correlated and differed significantly between foraging ecotypes. This research validates that pup blood serum and whisker stable isotope values from 1‐month‐old pups can be used as indicators of female isotopic niche and therefore foraging ecotype. This tool can be used across all NZ sea lion colonies to indicate female NZ sea lion foraging ecotypes. For the Auckland Islands, it could determine the proportion of breeding females exposed to negative interactions with fisheries, leading to a better understanding of the level of these effects and helping to implement appropriate management to mitigate impacts.

Isotope values from milk and blood serum in New Zealand sea lions: are pups feeding on milk a trophic level higher than their mothers?

Stable isotope analysis is increasingly used to investigate diet and foraging behaviour in marine wildlife. For marine mammals, samples from offspring are being used as proxies for their mothers foraging isotope niche as the transfer of nutrients between mother and neonates is solely through milk. Most of these proxy studies have, however, used only easily collected tissues, such as fur or whiskers. Quantifying the changes in δ13C and δ15N values between mother and pup requires the measurement of the mother/offspring pairs’ milk and blood serum. Here, δ13C and δ15N values were measured from serum and milk samples from lactating New Zealand (NZ) sea lion, Phocarctos hookeri females and their pups. The change in δ13C values between mother and pup serum averaged ~ 0.8‰. Whole milk was strongly δ13C depleted compared to serum δ13C values from either mothers or pups. The change in δ15N values averaged 1.3‰ between mother and pup serum, while differences in δ15N values from whole milk to mother or pup serum averaged 0.4‰ and 0.9‰, respectively. Lactating NZ sea lions are known to have two distinct foraging ecotypes which can be identified in their isotopic values and these differences could also be determined in the δ15N values of milk and serum samples from their pups. Similar to other research, the findings confirm that changes in δ13C and δ15N between tissues of mothers and pups are species and tissue specific, and greater research is needed to understand their physiological and biochemical isotopic relationship.

Extreme diving of females at the largest colony of New Zealand sea lions, Phocarctos hookeri

The diving behaviours of marine predators are thought to be coupled with species demographics. Species that forage at or close to their physiological limits will be limited in their ability to respond to natural or anthropogenic induced changes in their environment. This is the case for the New Zealand sea lion (Phocarctos hookeri). A previous study from Enderby Island, Auckland Islands, the third largest colony for the endangered species, showed lactating females exhibit extreme diving behaviour, and that individuals have either: a benthic diving ecotype or a deeper, more varied mesopelagic diving ecotype which are maintained throughout their adult life. The ecological significance and implications for individual foraging specialisation has major consequences for this species as mesopelagic foragers are more likely to suffer mortality from fisheries than benthic foragers. We investigated the diving behaviour of lactating females from Dundas Island, Auckland Islands, the largest breeding colony for New Zealand sea lions. The diving behaviour of 24 lactating females was examined and confirmed that both diving ecotypes exist and that females at this colony are also operating at the upper limit of their physiological capability. Enderby and Dundas Island are the largest breeding colonies for the New Zealand sea lion and together represent 69% of this species pup production. This population has significantly declined since 1998, predominantly due to direct and indirect fisheries interactions. Measurable conservation and management steps are therefore critical to mitigate the impacts of fisheries on this population.

Pup mortality in New Zealand sea lions (Phocarctos hookeri) at Enderby Island, Auckland Islands, 2013-18.

New Zealand sea lions (Phocarctos hookeri) are an endemic and endangered species. Pup mortality at Enderby Island (50.5°S, 166.28°E) in the New Zealand sub-Antarctic has been well studied, with subsequent investigations yielding more intricate detail of the causes of mortality, as new diagnostic methods become available. Klebsiella pneumoniae was first reported in 2001–02 at this site, causing a pup mortality epizootic and is now known to be present at several colonies. This bacterium is a common mucosal commensal of humans and animals, however the agent found in pups at necropsy is a hypervirulent strain, readily recognised in microbial culture as being hypermucoviscous. Infection causes septicaemia with a common syndrome of subsequent meningitis and polyarthritis. This investigation uses histopathology and microbiology, with new modalities such as matrix assisted laser desorption/ionisation—time of flight mass spectrometry to show that Klebsiella septicaemia could have historically been, and continues to be, the most important cause of pup mortality, but has been previously underrepresented due to the often cryptic presentation and sometimes peracute course of disease. Hypermucoviscous K. pneumoniae should be considered a serious threat to pup survival in the species, causing on average 60.2% of pup deaths annually at Enderby Island between 2013 and 2018, with likely more continuing mortality following pup dispersal and the cessation of the summer monitoring season. Less common causes of death included starvation (14.8%), trauma/asphyxiation (9.9%) and other infections (7%). This study forms the basis for further evaluation of risk factors for pup mortality in the species, with a view to developing active mitigation.

Causes of adult mortality in two populations of New Zealand sea lions (Phocarctos hookeri)

The New Zealand sea lion is an endangered species endemic to New Zealand. While causes of death are well described for pups of this species, mortality in adults is poorly characterised. This study investigated causes of death in 136 New Zealand sea lions in two different populations: a major breeding site on remote, uninhabited Enderby Island in the sub-Antarctic, and a slowly increasing recolonising population on the inhabited mainland. For animals with at least a partial diagnostic investigation (n = 112), the most frequently diagnosed causes of mortality were infectious disease (41/112; 37%), particularly tuberculosis due to M. pinnipedii (20/112; 18%), and conspecific trauma (27/112; 24%). Anthropogenic trauma was an important cause of death in mainland sea lions (9/33; 26%). Deliberate anthropogenic mortality has previously been identified as the greatest potential threat to population recovery for mainland sea lions, and as human and pinniped populations increase, managing interactions between these species will become increasingly important.

Population growth of an endangered pinniped—the New Zealand sea lion (Phocarctos hookeri)—is limited more by high pup mortality than fisheries bycatch

AbstractThe endangered New Zealand sea lion, Phocarctos hookeri is killed as incidental bycatch in a trawl fishery operating near their second largest population on Campbell Island in New Zealand’s sub-Antarctic. Using the Potential Biological Removal (PBR) procedure to assess the sustainability of this bycatch for the sea lion population on Campbell Island indicated that annual bycatch estimates, particularly following the implementation of bycatch mitigation measures, are below the PBR threshold of 25 (derived using a precautionary approach). Preliminary Population Viability Analysis (PVA) modelling supported the finding that current bycatch levels, especially given a strong male bias (98%) in bycatch, are sustainable for this population. Models showed that reducing pup mortality through management actions, such as installing ramps in wallows where large numbers of pups drown, would lead to increased population growth. While obtaining more accurate data on population status and demographic parameters for the Campbell Island population should be a priority, this will take many years of research. The PBR and PVA tools demonstrate that contemporary conservation management should continue to focus on increasing pup survival while maintaining mitigation approaches that have reduced bycatch to low levels, together with high observer coverage to sustain confidence in annual bycatch estimates.

Pathology and molecular epidemiology of Mycobacterium pinnipedii tuberculosis in native New Zealand marine mammals.

Mycobacterium pinnipedii causes tuberculosis in a number of pinniped species, and transmission to cattle and humans has been reported. The aims of this study were to: characterize the pathology and prevalence of tuberculosis in New Zealand marine mammals; use molecular diagnostic methods to confirm and type the causal agent; and to explore relationships between type and host characteristics. Tuberculosis was diagnosed in 30 pinnipeds and one cetacean. Most affected pinnipeds had involvement of the pulmonary system, supporting inhalation as the most common route of infection, although ingestion was a possible route in the cetacean. PCR for the RD2 gene confirmed M. pinnipedii as the causal agent in 23/31 (74%) cases (22 using DNA from cultured organisms, and one using DNA from formalin-fixed paraffin-embedded (FFPE) tissue), including the first published report in a cetacean. RD2 PCR results were compared for 22 cases where both cultured organisms and FFPE tissues were available, with successful identification of M. pinnipedii in 7/22 (31.8%). In cases with moderate to large numbers of acid-fast bacilli, RD2 PCR on FFPE tissue provided a rapid, inexpensive method for confirming M. pinnipedii infection without the need for culture. VNTR typing distinguished New Zealand M. pinnipedii isolates from M. pinnipedii isolated from Australian pinnipeds and from common types of M. bovis in New Zealand. Most (16/18) M. pinnipedii isolates from New Zealand sea lions were one of two common VNTR types whereas the cetacean isolate was a type detected previously in New Zealand cattle.

Draft Whole-Genome Sequences of Seven Isolates of Klebsiella pneumoniae from New Zealand Sea Lions.

Klebsiella pneumoniae is a Gram-negative bacterium that may cause infection in a broad range of hosts. We report here the genome sequences of seven K. pneumoniae isolates from New Zealand sea lions.

Mate choice explains high genetic diversity in a small founding population of the New Zealand sea lion (Phocarctos hookeri)

Founder populations are susceptible to reduced genetic diversity, which can hinder successful population establishment. A new genetic lineage of the New Zealand sea lion (Phocarctos hookeri) has recently colonised the historical range of the New Zealand mainland (Otago Peninsula). Despite a small founding population, previous research indicated that nuclear genetic diversity in the Otago Peninsula population is similar to that of the larger source population (Sandy Bay, Auckland Islands). Our research aimed to identify whether mechanisms of female mate choice could help to explain the unexpectedly high level of genetic diversity in the founder population. We used genetic data at 12 microsatellite loci for mother–pup pairs from both populations, and the software COLONY to identify putative paternal genotypes inferred from allele sharing between known mother–pup pairs. We found that mating pairs were, on average, more related at the Otago Peninsula location. However, Sandy Bay females were mating with males more related to themselves than expected by chance, while the Otago Peninsula females were not. These findings suggest that female choice in this otariid species appears important, although may be constrained in some situations. Our findings also help to explain how the recently founded population is able to maintain a viable, growing population.

Preliminary assessment of the foraging behaviour and population dynamics of a cryptic population of the endangered New Zealand sea lion

Preliminary assessment of the foraging behaviour and population dynamics of a cryptic population of the endangered New Zealand sea lion

Stable isotope signatures of whisker and blood serum confirm foraging strategies for female New Zealand sea lions (Phocarctos hookeri) derived from telemetry

Recognizing the individual variability of foraging behaviour of marine predators is important for understanding their role in the marine ecosystem and identifying how species may respond to environmental variability or human impacts. This research examines stable isotope signatures (δ13C and δ15N) of blood serum and whiskers from 22 female New Zealand sea lions (Phocarctos hookeri (Gray, 1844)) to determine if the isotopic composition of serum reflects foraging strategy, and whether serum and proximal whisker growth have similar signatures, therefore indicating the isotopic composition of whiskers also reflects the foraging strategy diet at the time of their growth. Female New Zealand sea lions are known to have two distinct foraging strategies (mesopelagic or benthic ecotypes), shown to be habitual within and between years. Females who are known to be mesopelagic foragers have higher overlap and are at greater risk of harmful interactions with fisheries. This research found that the two foraging strategies identified from telemetry are also associated with different δ13C and δ15N isotopic values from blood serum and whiskers. Therefore, stable isotope analysis could be used to determine the proportion of the female population that are likely to be exposed to the detrimental direct and indirect interactions with fisheries.

Marine mammal population decline linked to obscured by-catch

Declines of marine megafauna due to fisheries by-catch are thought to be mitigated by exclusion devices that release nontarget species. However, exclusion devices may instead conceal negative effects associated with by-catch caused by fisheries (i.e., unobserved or discarded by-catch with low postrelease survival or reproduction). We show that the decline of the endangered New Zealand (NZ) sea lion (Phocarctos hookeri) is linked to latent levels of by-catch occurring in sub-Antarctic trawl fisheries. Exclusion devices have been used since 2001 but have not slowed or reversed population decline. However, 35% of the variability in NZ sea lion pup production is explained by latent by-catch, and the population would increase without this factor. Our results indicate that exclusion devices can obscure rather than alleviate fishery impacts on marine megafauna.