Abstract Spectroscopic analyses of young late-type stars suffer from systematic inaccuracies, typically under-estimating metallicities but over-estimating abundances of certain elements including oxygen and barium. Effects are stronger in younger and cooler stars, and recent evidence specifically indicates a connection to the level of chromospheric activity. We present here a two-component spectroscopic model representing a non-magnetic baseline plus a magnetic spot, and analyse the resulting synthetic spectra of young solar analogues using a standard spectroscopic technique. For a moderately active star with solar parameters and chromospheric activity index $\log R_\text{HK}^{\prime }= -4.3$ (∼100 Myr), we predict that [Fe/H] is underestimated by 0.06 dex while vmic is overestimated by 0.2 km s−1; for higher activity levels we predict effects as large as 0.2 dex and 0.7 km s−1. Predictions are in agreement with literature data on solar twins, and indicate that the model is a plausible explanation to the observed effects. The model is simple enough that it can be included in spectroscopic packages with only changes to the underlying spectrum synthesis modules, if a $\log R_\text{HK}^{\prime }$ value is provided.
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