Yellow Blotches Research Articles

A new species within the Enteromius kerstenii complex (Actinopterygii, Cyprinidae, Smiliogastrinae) from south-western Ethiopia

A new species of small-sized smiliogastrin barb, Enteromius gamo sp. nov., is described from tributaries to lakes Abaya and Chamo in south-western Ethiopia. The new species belongs to a readily diagnosable group commonly identified as E. kerstenii, exhibiting a thickened and serrated last unbranched ray in the dorsal fin, a low number of scales in the lateral series (≤ 27), and a yellow, orange or reddish blotch on operculum. Pairwise genetic distances between the new species from Ethiopia and specimens of E. kerstenii from close to the type locality in north-eastern Tanzania were 7.5–8.3 % (COI) and 8.9–10.1 % (cytb). Enteromius gamo sp. nov. is morphologically distinguished from E. kerstenii and all examined congeners from Tanzania, Kenya, and Uganda primarily by short anterior (15.8–35.1 %, mean 27.4 %, of snout length) and posterior (63.2–95.7 %, mean 81.0 %, of snout length) barbels. The new species is known only from wetlands and side channels of rivers (Hare, Sile, and Sago) along the western shores of lakes Abaya and Chamo.

Chenopodium quinoa, a New Host for Alternaria Section Alternata and Alternaria Section Infectoriae Causing Yellow Leaf Blotch Disease.

Quinoa (Chenopodium quinoa Willd.) is a native American crop mainly grown in the Andes of Bolivia and Peru. During the last decades, the cultivation of quinoa has expanded to more than 125 countries. Since then, several diseases of quinoa have been characterized. A leaf disease was observed on quinoa plants growing in an experimental plot in Eastern Denmark in 2018. The symptoms produced by the associated fungi consisted of small yellow blotches on the upper surface of leaves with a pale chlorotic halo surrounding the lesion. These studies used a combination of morphology, molecular diagnostics, and pathogenicity tests to identify two different Alternaria species belonging to Alternaria sections Infectoriae and Alternata as the causal agent of observed disease symptoms. To the best of our knowledge, this is the first report of Alternaria spp. as foliar pathogens of quinoa. Our findings indicate the need for additional studies to determine potential risks to quinoa production.

A new species of armored catfish of the genus Scobinancistrus (Loricariidae: Hypostominae) from the Xingu River basin, Brazil

Abstract A new species of Scobinancistrus from the Xingu River, Brazil, is described. It can be distinguished from its congeners by color pattern and a combination of non-exclusive characters: overall body covered by large yellow spaced blotches over a dark background (vs. small round and densely packed spots over light or dark background in S. pariolispos and S. aureatus); lack of orange to yellow/orange distal band on dorsal and caudal fins (vs. presence in S. aureatus), dorsal fin not reaching adipose-fin supporting plate when adpressed (vs. reaching the adipose-fin plate in S. pariolispos and S. aureatus). The new species is only known from a portion of the middle Xingu River, ranging from the Volta Grande do Xingu, an area under a strong anthropic impact due to the construction of the Belo Monte dam, to near the Iriri River confluence with the Xingu River. Aspects concerning the species’ threats and its conservation status are discussed.

Tomato brown rugose fruit virus: An emerging and rapidly spreading plant RNA virus that threatens tomato production worldwide.

Tomato brown rugose fruit virus (ToBRFV) is an emerging and rapidly spreading RNA virus that infects tomato and pepper, with tomato as the primary host. The virus causes severe crop losses and threatens tomato production worldwide. ToBRFV was discovered in greenhouse tomato plants grown in Jordan in spring 2015 and its first outbreak was traced back to 2014 in Israel. To date, the virus has been reported in at least 35 countries across four continents in the world. ToBRFV is transmitted mainly via contaminated seeds and mechanical contact (such as through standard horticultural practices). Given the global nature of the seed production and distribution chain, and ToBRFV's seed transmissibility, the extent of its spread is probably more severe than has been disclosed. ToBRFV can break down genetic resistance to tobamoviruses conferred by R genes Tm‐1, Tm‐2, and Tm‐2 2 in tomato and L 1 and L 2 alleles in pepper. Currently, no commercial ToBRFV‐resistant tomato cultivars are available. Integrated pest management‐based measures such as rotation, eradication of infected plants, disinfection of seeds, and chemical treatment of contaminated greenhouses have achieved very limited success. The generation and application of attenuated variants may be a fast and effective approach to protect greenhouse tomato against ToBRFV. Long‐term sustainable control will rely on the development of novel genetic resistance and resistant cultivars, which represents the most effective and environment‐friendly strategy for pathogen control.Taxonomy Tomato brown rugose fruit virus belongs to the genus Tobamovirus, in the family Virgaviridae. The genus also includes several economically important viruses such as Tobacco mosaic virus and Tomato mosaic virus.Genome and virionThe ToBRFV genome is a single‐stranded, positive‐sense RNA of approximately 6.4 kb, encoding four open reading frames. The viral genomic RNA is encapsidated into virions that are rod‐shaped and about 300 nm long and 18 nm in diameter. Tobamovirus virions are considered extremely stable and can survive in plant debris or on seed surfaces for long periods of time.Disease symptomsLeaves, particularly young leaves, of tomato plants infected by ToBRFV exhibit mild to severe mosaic symptoms with dark green bulges, narrowness, and deformation. The peduncles and calyces often become necrotic and fail to produce fruit. Yellow blotches, brown or black spots, and rugose wrinkles appear on tomato fruits. In pepper plants, ToBRFV infection results in puckering and yellow mottling on leaves with stunted growth of young seedlings and small yellow to brown rugose dots and necrotic blotches on fruits.

Screening of the world winter bread wheat collection for leafstem disease resistance in the Lower Volga region

The current paper has presented the study results of collection winter bread wheat samples. The purpose of the study was to screen the world collection of winter bread wheat for disease resistance in the Nizhnevolzhsky region. The study was carried out on the basis of the FSBSI “Federal Agricultural Research Center of the South-East” (Saratov). In 2017–2021 there was conducted an estimation of the resistance of 152 winter bread wheat samples to the main pathogens. The samples were sown at the optimal time with the SSFC-8 seeder on plots of 3 m2 in a single repetition. The seeding rate was 450 germinating seeds per m2 . There have been studied the world collection varietal samples of winter bread wheat VIR (from breeding centers of the USA, Canada, Ukraine, Slovakia, Latvia, Hungary, etc.), as well as the samples of domestic breeding (FANC of the South-East, NTsZ named after P.P. Lukyanenko, Severokavkazsky FNATS, etc.). There have been identified the most harmful leaf-stem diseases, such as brown rust (Puccinia triticina Erikss.) and stem rust (Puccinia graminis f. sp. Tritici), septoria (Septoria tritici Rob. et Desm.) and yellow leaf blotch (Pyrenophora tritici-repentis (Died) Drechsler). There has been characterized the resistance of the winter bread wheat collection to the complex of leaf-stem diseases. There have been identified two samples with group resistance to brown and stem rusts, septoria and pyrenophorosis; one sample resistant to leaf rust and stem rust; three samples resistant to stem rust and septoria; one sample resistant to leaf and stem rust and septoria; six samples resistant to septoria and pyrenophorosis.

A Novel Lineage of Cile-Like Viruses Discloses the Phylogenetic Continuum Across the Family Kitaviridae.

An increasing number of plant species have been recognized or considered likely reservoirs of viruses transmitted by Brevipalpus mites. A tiny fraction of these viruses, primarily those causing severe economic burden to prominent crops, have been fully characterized. In this study, based on high-throughput sequencing, transmission electron microscopy analyses of virions in plant-infected tissues, viral transmission experiments, and the morphoanatomical identification of the involved Brevipalpus mites, we describe molecular and biological features of viruses representing three new tentative species of the family Kitaviridae. The genomes of Solanum violifolium ringspot virus (SvRSV, previously partially characterized), Ligustrum chlorotic spot virus (LigCSV), and Ligustrum leprosis virus (LigLV) have five open reading frames (ORFs) > 500 nts, two distributed in RNA1 and three in RNA2. RNA1 of these three viruses display the same genomic organization found in RNA1 of typical cileviruses, while their RNA2 are shorter, possessing only orthologs of genes p61, p32, and p24. LigCSV and LigLV are more closely related to each other than to SvRSV, but the identities between their genomic RNAs were lower than 70%. In gene-by-gene comparisons, ORFs from LigCSV and LigLV had the highest sequence identity values (nt sequences: 70–76% and deduced amino acid sequences: 74–83%). The next higher identity values were with ORFs from typical cileviruses, with values below 66%. Virions of LigLV (≈ 40 nm × 55 nm) and LigCSV (≈ 54 nm × 66 nm) appear almost spherical, contrasting with the bacilliform shape of SvRSV virions (≈ 47 nm × 101 nm). Mites collected from the virus-infected plants were identified as Brevipalpus papayensis, B. tucuman, and B. obovatus. Viruliferous B. papayensis mites successfully transmitted LigCSV to Arabidopsis thaliana. SvRSV, LigCSV, and LigLV seem to represent novel sub-lineages of kitaviruses that descent on parallel evolutionary branches from a common ancestor shared with the tentative cile-like virus hibiscus yellow blotch virus and typical cileviruses. Biological and molecular data, notably, the phylogenetic reconstruction based on the RdRp proteins in which strong support for monophyly of the family Kitaviridae is observed, mark an advance in the understanding of kitavirids.

A New Species of Red-eyed frog of the genus Pristimantis (Anura: Strabomantidae) from the Western Slope of the Cordillera Occidental, Risaralda, Colombia.

We describe a new species of red-eyed frog of the genus Pristimantis from the tropical forest at elevations of 10001350 m on western slope of the Cordillera Occidental, department of Risaralda, Colombia. The new species differs from congeners by having dorsum skin shagreened with low tubercles; vocal sac single, median and subgular in males, iris red wine in females copper red in males, and by presenting black groin coloration with yellow light blotches. In addition, the new species has concave frontoparietals, an unusual character described in Brachycephaloidea frog species.

珊瑚礁生态系统病毒研究进展

PDF HTML阅读 XML下载 导出引用 引用提醒 珊瑚礁生态系统病毒研究进展 DOI: 10.5846/stxb202005021086 作者: 作者单位: 作者简介: 通讯作者: 中图分类号: 基金项目: 国家自然科学基金重大项目（42090041）；国家自然科学基金重点项目（42030502）；广西南海珊瑚礁研究重点实验室自主基金项目（GXLSCRSCS2021103） A review of recent researches on viruses in coral reef ecosystem Author: Affiliation: Fund Project: 摘要 | 图/表 | 访问统计 | 参考文献 | 相似文献 | 引证文献 | 资源附件 | 文章评论 摘要:病毒对珊瑚礁生态系统中的生物进化、生物地球化学循环、珊瑚疾病等方面具有重要的生态影响。随着珊瑚礁的全球性退化，病毒在珊瑚礁生态系统中的功能与危害日益显现。综述了珊瑚礁生态系统中病毒的研究现状与进展，包括：（1）珊瑚礁病毒的多样性与分布特征（水体、宿主、核心病毒组）；（2）珊瑚礁病毒的生态功能（感染方式、促进生物进化、生物地球化学循环）；（3）珊瑚礁病毒对全球气候变化的响应（热压力、珊瑚疾病）。总体而言，珊瑚礁生态系统具有极高的病毒多样性，所发现的60个科占已知所有病毒科数量的58%。珊瑚的核心病毒组主要由双链DNA病毒、单链DNA病毒、单链逆转录病毒所组成，珊瑚黏液层对病毒具有富集作用。"Piggyback-the-Winner"（依附-胜利）是病毒在珊瑚礁中主要的生物动力学模式，其可通过水平基因迁移的方式促进礁区生物进化。病毒可通过裂解细菌与浮游藻类的途径参与珊瑚礁的生物地球化学循环，尤其是碳循环与氮循环过程。此外，病毒还具有介导珊瑚热白化与直接引发珊瑚疾病的能力，这会影响珊瑚礁生态系统应对气候变化的适应性与恢复力。基于国际上的研究进展综述，结合南海珊瑚礁生态现状提出以下研究方向，以期促进我国珊瑚礁病毒学的发展：（1）开展南海珊瑚礁中病毒多样性的识别及其时-空分布特征研究；（2）探索病毒对南海珊瑚热白化、珊瑚疾病的介导作用及其与气候变化的关系；（3）揭示病毒对南海珊瑚礁生物地球化学循环的贡献。 Abstract:Viruses have an important ecological impact on the biological evolution, biogeochemical cycle, and coral diseases in coral reef ecosystems. With the global degradation of coral reefs, the functions and hazards of viruses in coral reef regions have become increasingly prominent. In this article, recent researches on viruses in coral reef ecosystems were reviewed, which included:(1) The diversity and distribution characteristics of viruses in coral reef ecosystem (sea water, host and core coral virome); (2) Ecological function of viruses in coral reef ecosystem (infection pattern, promoting biological evolution, and biogeochemical cycle); (3) Viruses response to global climate change in coral reef ecosystem (thermal stress and coral diseases). Accordingly, coral reef ecosystems have an extremely high viral richness and diversity. About 60 virus families are reported in coral reef ecosystems around the world, which account for 58% of all known viral families. Also, the core coral virome is manly composed of double-stranded DNA virus (dsDNA virus), single-stranded DNA virus (ssDNA virus) and retrovirus. The viruses in coral surface mucus layer are more abundant and diverse, due to enrichment with viruses from around environment in coral reef ecosystem. "Piggyback-the-Winner" is the main biodynamic mode of viruses in coral reefs, which indicates that viruses can promote the evolution of organisms by horizontal gene transduction in reef regions. In addition, viruses can participate in the carbon and nitrogen cycles of coral reefs by lysing bacteria and planktonic algae, respectively, which plays an important role in biogeochemical cycles of coral reef ecosystem. It's worth noting that viruses have ability to mediate coral thermal bleaching, which has closely associations with Phycodnaviridae and Herpesviridae. Moreover, viruses can also lead to coral diseases (e.g., white plague, white band disease and yellow blotch), which can affect the adaptability and resilience of coral reefs to global climate change. Herein, based on a systematic review of international research progress and current ecological status of coral reefs in the South China Sea, this article proposes the following research directions, in order to promote the development of coral reef virology:(1) The diversity and spatial-temporal distribution characteristics of viruses in coral reefs from the South China Sea; (2) The mediation effect of viruses on coral thermal bleaching and diseases in the South China Sea, and their relationship with intensified global climate change; (3) The contribution of viruses in biogeochemical cycles (e.g., carbon and nitrogen cycles) of coral reef ecosystems in the South China Sea. 参考文献 相似文献 引证文献

Two New Cryptic Pristimantis (Anura, Craugastoridae) from the Southern Amazon Basin of Peru with Taxonomic Comments on Pristimantis imitatrix (Duellman, 1978)

Fieldwork in premontane and lowland Amazonian forest (385–1,075 m above sea level) in and around the Amarakaeri Communal Reserve in southeastern Peru led us to describe two new species of the genus Pristimantis. We used integrative evidence from several external morphological characters, morphometric and molecular data, geographic distributions, and multivariate analyses to support the identification of these new species. Pristimantis gagliardi sp. nov. is characterized by lacking a visible tympanic annulus and membrane on skin, having basal webbing between toes, yellow blotches in groin and hidden surfaces of shanks, W-shaped scapular mark, snout subacuminate bearing a very small papilla at tip of snout, and snout–vent length (SVL) = 17.7–21.3 mm in adult males and SVL = 26.7–29.2 mm in females. Pristimantis okmoi sp. nov. is characterized by having a visible tympanic annulus and membrane on skin, basal webbing between toes, yellow blotches in groin and hidden surfaces of shanks, W-shaped scapular mark, snout rounded with small rostral papilla, and SVL = 13.63–17.04 mm in adult males; females unknown. Both species were initially misidentified as P. carvalhoi or P. imitatrix. Additionally, we provide new morphological and phylogenetic data on adult specimens of Pristimantis imitatrix, a rare Amazonian species described based on a single subadult female.

Chromatic leucism in the flap shell turtle, Lissemys punctata from Bangladesh

The spotted flap shell turtle, Lissemys punctata (Bonnaterre, 1789) has a distribution in Bangladesh, India, Myanmar, Nepal and Pakistan. In Bangladesh, this species is widely distributed throughout the freshwater wetlands and the low-lying floodplains, coastal islands, and hill districts. This species is listed in CITES (Appendix II) and protected by Bangladesh Wildlife Conservation & Security Act 2012 (Schedule II), where commercial trade is strictly prohibited. Lissemys punctata has an oval and domed carapace with olive-green colour spotted by dark yellow blotches. The head is also olive green often with yellow blotches, whereas the plastron is whitish or pale yellow. The colour of this species may vary depending on its habitat and defence strategy. Colour aberration in animals may occur due to a lack of melanin. Golden yellow colour aberration (chromatic leucism) is rare in animals, especially in turtles. This might be because of the absence of melanin in the outer dermis. The presence of high xanthophores and yellow pteridine pigments in the skin are also responsible for the golden yellow colour aberration.

A Virus Infecting Hibiscus rosa-sinensis Represents an Evolutionary Link Between Cileviruses and Higreviruses.

Hibiscus (Hibiscus spp.) are popular ornamental and landscape plants in Hawaii which are susceptible to foliar diseases caused by viruses belonging to the genera Cilevirus and Higrevirus (family Kitaviridae). In this study, a virus infecting H. rosa-sinensis plants displaying foliar symptoms consistent with infection by a kitavirus, including yellow chlorotic blotches with a green perimeter, was characterized. The genome consisted of two RNAs 8.4 and 4.4 kb in length, and was organized most similarly to cileviruses, but with important distinctions. These included the location of the p29 homolog as the 3′-terminal open reading frame (ORF) of RNA2 instead of its typical locus at the 3′-end of RNA1; the absence of a p15 homolog on RNA2 and the adjacent intergenic region which also harbors small putative ORFs of unknown function; and the presence of an ORF encoding a 10 kDa protein at the 3′-terminal end of RNA1 that was also found to be present in the hibiscus green spot virus 2 genome. Spherical particles approximately 55–65 nm in diameter were observed in infected leaf tissue, and viral RNA was detected by reverse-transcription PCR in individual mites collected from symptomatic plants tentatively identified as Brevipalpus yothersi. Although phylogenetic analyses placed this virus between the higrevirus and cilevirus clades, we propose the tentative taxonomic placement of this virus, designated hibiscus yellow blotch virus (HYBV), within the genus Cilevirus.

Chimaera compacta, a new species from southern Indian Ocean, and an estimate of phylogenetic relationships within the genus Chimaera (Chondrichthyes: Chimaeridae)

Chimaera compacta sp. nov., a new species of shortnose chimaera (Holocephali: Chimaeriformes: Chimaeridae), is described from a single specimen collected at 595–655 m depth, off Amsterdam Island, in the southern Indian Ocean. The species is easily distinguished from its congeners by the combination of the following characters: massive head with short snout; stocky and relatively long trunk 44% BDL, short tail with second dorsal fin base 72% BDL; long pelvic fin anterior margin 26% BDL. Caudal fin dorsal origin slightly posterior to caudal fin ventral origin. Firm, non-deciduous skin; brown color with yellow blotches. Chimaera compacta sp. nov. is morphologically close to Chimaera lignaria Didier 2002 from New Zealand and Chimaera willwatchi Clerkin, Ebert and Kemper 2017 from south western Indian Ocean. The new species can be distinguished from other Chimaera species based on DNA sequences divergence of the COI and NADH2 genes. This species has a nucleotide sequence divergence (uncorrected p distances) for the studied genes of 4.2 and 4.1%, respectively, with its closest relatives. Phylogenetically, Chimaera compacta sp. nov. is nested within a well-supported group including Chimaera carophila Kemper, Ebert, Naylor and Didier 2014, Chimaera didierae Clerkin, Ebert and Kemper 2017, C. lignaria, Chimaera macrospina Didier, Last and White 2008, Chimaera notafricana Kemper, Ebert, Compagno and Didier 2010, Chimaera opalescens Luchetti, Iglesias and Sellos 2011, and C. willwatchi. It is the first Chimaeridae described for the Territory of the French Southern and Antarctic Lands.

Joá yellow blotch-associated virus, a new alphanucleorhabdovirus from a wild solanaceous plant in Brazil.

We identified a novel plant rhabdovirus infecting native joá (Solanum aculeatissimum) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The virus could be graft-transmitted to healthy joá and tomato plants but was not mechanically transmissible. RT-PCR using degenerate plant rhabdovirus L gene primers yielded an amplicon from extracted total RNA, the sequence of which was similar to those of alphanucleorhabdoviruses. Based on close sequence matches, especially with the type member potato yellow dwarf virus (PYDV), we adopted a degenerate-primer-walking strategy towards both genome ends. The complete genome of joá yellow blotch-associated virus (JYBaV) is comprised of 12,965 nucleotides, is less than 75% identical to that of its closest relative PYDV, and clusters with PYDV and other alphanucleorhabdoviruses in L protein phylogenetic trees, suggesting that it should be taxonomically classified in a new species in the genus Alphanucleorhabdovirus, family Rhabdoviridae. The genome organization of JYBaV is typical of the 'PYDV-like' subgroup of alphanucleorhabdoviruses, with seven genes (N-X-P-Y-M-G-L) separated by conserved intergenic regions and flanked by partly complementary 3' leader and 5' trailer regions.

Taxonomic revision of Hopliancistrus Isbrücker & Nijssen, 1989 (Siluriformes, Loricariidae) with redescription of Hopliancistrus tricornis and description of four new species

Hopliancistrus is an Ancistrini genus diagnosed by having few and very strong cheek odontodes on interopercular area, and a patch of strong and stiff odontodes on the antero-lateral border of the snout. The type species is herein redescribed based on types and recently collected specimens. In addition, four new congeneric species are described based on specimens collected in other parts of the Rio Xingu and Rio Tapajós basins. Hopliancistrus tricornis is distributed in the lower Rio Tapajós and is diagnosed by the possession of four branched anal-fin rays and relatively large white to yellow spots on trunk and pectoral and pelvic fins, and dark brown spots on dorsal, caudal and anal fins. Hopliancistrus munduruku is described based on specimens from Rio Jamanxim (Rio Tapajós basin) and Rio Curuá (Rio Xingu basin) and is diagnosed by the possession of five branched anal-fin rays and large yellow blotches on trunk and dark brown to black spots over the fins. Hopliancistrus wolverine is distributed in the rapids of the lower and middle Rio Xingu and is diagnosed by the possession of five branched anal-fin rays and conspicuous small yellow dots on head, trunk and fins. Hopliancistrus xikrin is distributed in medium- to small-sized tributaries of the lower portion of Rio Xingu basin, and is diagnosed by absence of contact between the transverse process of the first dorsal-fin pterygiophore and the transverse process of the second pterygiophore. Hopliancistrus xavante is distributed in the tributaries of upper Rio Xingu basin, and is diagnosed by having a thick skin covering the nuchal plate; by having large white spots on trunk and fins; and by the possession of five branched anal-fin rays. An osteological description and a key for species identification are also provided.

Description of a new snake eel Ophichthus olivaceus (Teleostei: Anguilliformes, Ophichthidae) from the Red Sea.

A new species of snake eel Ophichthus olivaceus is described based on two specimens trawled from a depth of 35-63 m from a soft substratum off Jizan, Red Sea coast of southern Saudi Arabia. It differs from its congeners by the following combination of characters: vertebrae 141-145; tail moderately short (2.15 in TL); head short (9.6-11.1 in TL); uniserial teeth in jaws and on vomer; pectoral fins slightly elongate, not lanceolate, upper rays longer than the lower; dorsal-fin origin above middle of pectoral fin; and a generally uniform, dark tan body with an olivaceous hue shading to tan or pale orange ventrally, with two pale yellow blotches above pectoral-fin base, snout and lower jaw dark brown, and olivaceous median fins. Its divergence from other mitochondrial-analyzed species is shown by phylogenetic analysis of the mitochondrial COI barcoding region. A key to the Indian Ocean species is provided.

Characterisation of a novel Emaravirus identified in mosaic‐diseased Eurasian aspen (Populus tremula)

AbstractSince Emaraviruses have been discovered in 2007 several new species were detected in a range of host plants. Five genome segments of a novel Emaravirus from mosaic‐diseased Eurasian aspen (Populus tremula) have been completely determined. The monocistronic, segmented ssRNA genome of the virus shows a genome organisation typical for Emaraviruses encoding the viral RNA‐dependent RNA polymerase (RdRP, 268.2 kDa) on RNA1 (7.1 kb), a glycoprotein precursor (GPP, 73.5 kDa) on RNA2 (2.3 kb), the viral nucleocapsid protein (N, 35.6 kDa) on RNA3 (1.6 kb), and a putative movement protein (MP, 41.0 kDa) on RNA4 (1.6 kb). The fifth identified genome segment (RNA5, 1.3 kb) encodes a protein of unknown function (P28, 28.1 kDa). We discovered that it is distantly related to proteins encoded by Emaraviruses, such as P4 of European mountain ash ringspot‐associated virus. All proteins from this group contain a central hydrophobic region with a conserved secondary structure and a hydrophobic amino acid stretch, bordered by two highly conserved positions, thus clearly representing a new group of homologues of Emaraviruses. The virus identified in Eurasian aspen is closely associated with observed leaf symptoms, such as mottle, yellow blotching, variegation and chloroses along veins. All five viral RNAs were regularly detectable by RT‐PCR in mosaic‐diseased P. tremula in Norway, Finland and Sweden (Fennoscandia). Observed symptoms and testing of mosaic‐diseased Eurasian aspen by virus‐specific RT‐PCR targeting RNA3 and RNA4 confirmed a wide geographic distribution of the virus in Fennoscandia. We could demonstrate that the mosaic‐disease is graft‐transmissible and confirmed that the virus is the causal agent by detection in symptomatic, graft‐inoculated seedlings used as rootstocks as well as in the virus‐infected scions used for graft‐inoculation. Owing to these characteristics, the virus represents a novel species within the genus Emaravirus and was tentatively denominated aspen mosaic‐associated virus.

Pristipomoides amoenus (Snyder 1911), a valid species of jobfish (Pisces, Lutjanidae), with comparisons to P. argyrogrammicus (Valenciennes 1832).

Platyinius amoenus Snyder 1911 has long been considered a junior synonym of Pristipomoides argyrogrammicus (Valenciennes 1832), however, the two are discernible as distinct species from color patterns and counts of gill rakers based on examination of their type materials and non-type specimens. Furthermore, genetic differences based on molecular analysis among the two species (mtDNA, COI gene) strongly support the validity of both species. Pristipomoides amoenus can be readily distinguished from P. argyrogrammicus in having no white margin to the dorsal, anal, and caudal fins, silvery blue spots continuing inside dorso-lateral yellow blotches, and presence of modally10 (vs. modally 12) lower gill rakers. Both species were collected sympatrically around Ishigaki Island, Okinawa, Japan.

A Description of the Possible Etiology of the Cilantro Yellow Blotch Disease.

A virus-like disease characterized by foliar yellow blotch symptoms and resembling those described for cilantro yellow blotch disease in California was observed in a 4.05-ha cilantro (Coriandrum sativum) cv. Santo field in Hidalgo County, Texas during spring 2019. Disease incidence at harvest was estimated at ∼20%, and the affected plants were rendered unmarketable. Foliar systemic chlorosis symptoms were observed on sap-inoculated Nicotiana occidentalis plants (n = 3) using inocula from symptomatic cilantro. Total RNA aliquots from 11 randomly collected leaf tissue samples (symptomatic = 7, asymptomatic = 4) were pooled into a composite cilantro RNA sample which was analyzed by high throughput sequencing (HTS). Analyses of the obtained 15.7 million raw reads (76 nt each) yielded virus-specific contigs that mapped to the genomes of alfalfa mosaic virus (AMV), beet pseudoyellows virus (BPYV), and lettuce chlorosis virus (LCV). Virus-specific primers designed from the HTS-derived sequences were used to screen the samples in two-step RT-PCR assays, resulting in the detection of AMV+BPYV in 3 of 7 symptomatic cilantro samples, AMV+LCV in 4 of 7 symptomatic cilantro samples, and AMV alone in the 4 asymptomatic cilantro and sap-inoculated N. occidentalis samples. The results represent the first reports of the natural infection of cilantro by BPYV and LCV and implicate the mixed infection of a Crinivirus and AMV in cilantro yellow blotch disease.

Comparative analysis of bacterial communities associated with healthy and diseased corals in the Indonesian sea.

Coral reef ecosystems are impacted by climate change and human activities, such as increasing coastal development, overfishing, sewage and other pollutant discharge, and consequent eutrophication, which triggers increasing incidents of diseases and deterioration of corals worldwide. In this study, bacterial communities associated with four species of corals: Acropora aspera, Acropora formosa, Cyphastrea sp., and Isopora sp. in the healthy and disease stages with different diseases were compared using tagged 16S rRNA sequencing. In total, 59 bacterial phyla, 190 orders, and 307 genera were assigned in coral metagenomes where Proteobacteria and Firmicutes were pre-dominated followed by Bacteroidetes together with Actinobacteria, Fusobacteria, and Lentisphaerae as minor taxa. Principal Coordinates Analysis (PCoA) showed separated clustering of bacterial diversity in healthy and infected groups for individual coral species. Fusibacter was found as the major bacterial genus across all corals. The lower number of Fusibacter was found in A. aspera infected with white band disease and Isopora sp. with white plaque disease, but marked increases of Vibrio and Acrobacter, respectively, were observed. This was in contrast to A. formosa infected by a black band and Cyphastrea sp. infected by yellow blotch diseases which showed an increasing abundance of Fusibacter but a decrease in WH1-8 bacteria. Overall, infection was shown to result in disturbance in the complexity and structure of the associated bacterial microbiomes which can be relevant to the pathogenicity of the microbes associated with infected corals.

A new subspecies of African fire salamander Salamandra algira (Urodela, Salamandridae) from the Middle Atlas Mountains, Morocco

A new subspecies within the Salamandra algira species complex from north-western Africa is described. Previous molecular analysis showed that the populations of S. algira splendens from north-western Morocco consisted of two well supported clades: clade 1 distributed in the Rif Mountains, from Chefchaouen (type locality) to Al Hoceima, and clade 2, located southern from clade 1 being isolated in the northern and central Middle Atlas Mountains. Clade 2 is herein described as a distinct subspecies: Salamandra algira atlanticassp. nov. based on morphological data, allopatric range and molecular divergence. This new subspecies shows an uncorrected pairwise distance of 0.0265 from clade 1 based on cytochrome b DNA sequences. Salamandra algira atlanticassp. nov. is a slender and large sized salamander with a highly variable colouration pattern. It can be distinguished from S. algira splendens by the greater proportion of coral red in the background colouration, being the only known subspecies of S. algira in which coral red can exceed the proportion of black. Variable number (0–5) of yellow to golden yellow dorsal blotches, but usually in lower numbers than the nominotypical subspecies. Salamandra algira atlanticassp. nov. inhabits subhumid to humid forests and karstic systems at mid to high elevations. We briefly discuss the phylogenetic and taxonomic issues among the genus Salamandra which encompasses more valid species than currently recognised.