Yeast SNARE Research Articles

Sec18 side-loading is essential for universal SNARE recycling across cellular contexts.

SNARE proteins drive membrane fusion as their core domains zipper into a parallel four-helix bundle1,2. After fusion, these bundles are disassembled by the AAA+ protein Sec18/NSF and its adaptor Sec17/ α-SNAP3,4 to make them available for subsequent rounds of membrane fusion. SNARE domains are often flanked by C-terminal transmembrane or N-terminal domains5. Previous structures of the NSF-α-SNAP-SNARE complex revealed SNARE domain threaded through the D1 ATPase ring6, posing a topological constraint as SNARE transmembrane domains would prevent complete substrate threading as suggested for other AAA+ systems7. Here, in vivo mass-spectrometry reveals N-terminal SNARE domain interactions with Sec18, exacerbating this topological issue. Cryo-EM structures of a yeast SNARE complex, Sec18, and Sec17 in a non-hydrolyzing condition shows SNARE Sso1 threaded through the D1 and D2 ATPase rings of Sec18, with its folded, N-terminal Habc domain interacting with the D2 ring. This domain does not unfold during Sec18/NSF activity. Cryo-EM structures under hydrolyzing conditions revealed substrate-released and substrate-free states of Sec18 with a coordinated opening in the side of the ATPase rings. Thus, Sec18/NSF operates by substrate side-loading and unloading topologically constrained SNARE substrates.

Binding of the exocyst complex to the SNARE regulator Sec1

Vesicles in eukaryotic cells act as intracellular carriers to transport cargo between membrane‐bound organelles and the plasma membrane. Cellular trafficking is a highly regulated process that is critical for maintaining cellular growth, homeostasis, signaling and division. These cellular trafficking events ultimately culminate in membrane fusion, where secretory vesicles release their contents to the extracellular space. However, the molecular and structural underpinnings of trafficking and membrane fusion still remains misunderstood. The process of intracellular membrane fusion relies on several conserved protein families, including SNAREs, Sec1/Munc18 (SM) proteins, multi‐subunit tethering complexes (e.g. exocyst), and Rab GTPases. Each of these regulatory factors plays multiple roles in assisting vesicle docking and SNARE assembly, indicating a trafficking system with overlapping sets of reactions. Exocyst, a hetero‐octameric protein complex, is proposed to tether vesicles to the plasma membrane and promote specific SNARE‐mediated membrane fusion. Previous binding experiments using recombinant proteins revealed interactions between two exocytic SNARE proteins and Sec1 with a single subunit of exocyst, Sec6. Currently, Sec6 is proposed to bind both binary (Sso1:Sec9), and ternary (Sso1:Sec9:Snc2) SNARE complexes during SNARE complex assembly. The timing in which Sec1 binds to the ternary SNARE complex and exocyst to mediate membrane fusion is unknown. Temperature sensitive sec1 yeast cells are defective for cell growth, SNARE complex assembly, and secretion of protein and lipid cargo at the restrictive temperature. This evidence suggests that Sec1 may play both a general and a specific role during membrane trafficking. Recent structural evidence from a mutant “activated” yeast exocyst complex shows increased flexibility and dynamics of two subunits of exocyst, Exo70 and Sec6, which lead to increased binding to SNAREs compared to wild‐type exocyst. Our study aims to further investigate the mechanisms of SNARE assembly and membrane fusion, using biochemical and EM methods to characterize the interactions of yeast exocyst, Sec1 and SNARE proteins. Using purified forms of each of the proteins and complexes, interactions between Sec1, SNARE proteins, and exocyst (wild type and activated mutant) are being analyzed and quantified.

Aegeline, a natural product from the plant Aegle marmelos, mimics the yeast SNARE protein Sec22p in suppressing α-synuclein and Bax toxicity in yeast

Herein, we have identified yeast Sec22p (ySec22p), a SNARE protein essential for endoplasmic reticulum to Golgi trafficking, as a suppressor of Bax-induced yeast apoptosis and corroborated published observations that ySec22p suppresses α-synuclein’s toxicity in yeast. It has been suggested that compounds which enhance expression, in neurons, of human homologues of ySec22p (Sec22Bp/Sec22p/Sec22A) would prevent synucleinopathies, such as Parkinson’s disease. With the aim of finding a small molecule that would mimic ySec22p, a library of natural products consisting of 394-compounds was screened using yeast cells that express either human α-synuclein or human Bax. The antioxidant aegeline, an alkaloid-amide occurring in the leaves of the plant Aegle marmelos Correa, was the only molecule that overcame apoptosis induced by both α-synuclein and Bax in yeast. Besides, aegeline also prevented growth block in cells expressing the more toxic A53T α-synuclein mutant. Restoration of cell growth occurred through inhibition of increased ROS levels, mitochondrial membrane potential loss and nuclear DNA fragmentation, characteristics of apoptosis manifested in α-synuclein or Bax-expressing cells. These results highlight the importance of yeast systems to identify rapidly molecules that may prevent the onset of apoptosis that occurs in Parkinson’s disease.

COPI mediates recycling of an exocytic SNARE by recognition of a ubiquitin sorting signal.

The COPI coat forms transport vesicles from the Golgi complex and plays a poorly defined role in endocytic trafficking. Here we show that COPI binds K63-linked polyubiquitin and this interaction is crucial for trafficking of a ubiquitinated yeast SNARE (Snc1). Snc1 is a v-SNARE that drives fusion of exocytic vesicles with the plasma membrane, and then recycles through the endocytic pathway to the Golgi for reuse in exocytosis. Removal of ubiquitin from Snc1, or deletion of a β'-COP subunit propeller domain that binds K63-linked polyubiquitin, disrupts Snc1 recycling causing aberrant accumulation in internal compartments. Moreover, replacement of the β'-COP propeller domain with unrelated ubiquitin-binding domains restores Snc1 recycling. These results indicate that ubiquitination, a modification well known to target membrane proteins to the lysosome or vacuole for degradation, can also function as recycling signal to sort a SNARE into COPI vesicles in a non-degradative pathway.

The shape of the transmembrane domain is a novel endocytosis signal for single-spanning membrane proteins.

Endocytosis is crucial for all cells as it allows them to incorporate material from the extracellular space and control the availability of transmembrane proteins at the plasma membrane. In yeast, endocytosis followed by recycling to the plasma membrane results in a polarised distribution of membrane proteins by a kinetic mechanism. Here, we report that increasing the volume of residues that constitute the exoplasmic half of the transmembrane domain (TMD) in the yeast SNARE Sso1, a type II membrane protein, results in its polarised distribution at the plasma membrane. Expression of this chimera in strains affected in either endocytosis or recycling revealed that this polarisation is achieved by endocytic cycling. A bioinformatics search of the Saccharomyces cerevisiae proteome identified several proteins with high-volume exoplasmic hemi-TMDs. Our experiments indicate that TMDs from these proteins can confer a polarised distribution to the Sso1 cytoplasmic domain, indicating that the shape of the TMD can act as a novel endocytosis and polarity signal in yeast. Additionally, a high-volume exoplasmic hemi-TMD can act as an endocytosis signal in a mammalian cell line.

Crystallization and preliminary X-ray diffraction analysis of Gos1p, a yeast SNARE protein.

The Gos1 protein (Golgi SNAP receptor complex member 1) is involved in the SNARE complex, which is the core machinery that drives membrane fusion between cargo-carrying vesicles and their target membranes in the secretory and endocytic pathways in yeast. Truncated versions of the Gos1 protein from Saccharomyces cerevisiae were cloned, expressed, purified and crystallized. The crystal belonged to space group P2₁2₁2₁, with unit-cell parameters a=39.67, b=43.58, c=81.94 Å, α=β=γ=90°. An X-ray diffraction data set was collected at 100 K to 1.63 Å resolution. Matthews coefficient (VM) calculations suggest that one molecule is present in the asymmetric unit, corresponding to a solvent content of ∼55%.

Live‐cell imaging of phosphatidic acid dynamics in pollen tubes visualized by Spo20p‐derived biosensor

Although phosphatidic acid (PA) is structurally the simplest membrane phospholipid, it has been implicated in the regulation of many cellular events, including cytoskeletal dynamics, membrane trafficking and stress responses. Plant PA shows rapid turnover but the information about its spatio-temporal distribution in plant cells is missing. Here we demonstrate the use of a lipid biosensor that enables us to monitor PA dynamics in plant cells. The biosensor consists of a PA-binding domain of yeast SNARE Spo20p fused to fluorescent proteins. Live-cell imaging of PA dynamics in transiently transformed tobacco (Nicotiana tabacum) pollen tubes was performed using confocal laser scanning microscopy. In growing pollen tubes, PA shows distinct annulus-like fluorescence pattern in the plasma membrane behind the extreme tip. Coexpression studies with markers for other plasmalemma signaling lipids phosphatidylinositol 4,5-bisphosphate and diacylglycerol revealed limited colocalization at the shoulders of the apex. PA distribution and concentrations show distinct responses to various lipid signaling inhibitors. Fluorescence recovery after photobleaching (FRAP) analysis suggests high PA turnover in the plasma membrane. Our data show that a biosensor based on the Spo20p-PA binding domain is suitable for live-cell imaging of PA also in plant cells. In tobacco pollen tubes, distinct subapical PA maximum corroborates its involvement in the regulation of endocytosis and actin dynamics.

Multiple and distinct strategies of yeast SNAREs to confer the specificity of membrane fusion

Trans-QabcR-SNARE pairing on opposing membranes is crucial for eukaryotic membrane fusion, but how selective pairs of Qabc- and R-SNARE proteins regulate membrane fusion specificity remains elusive. Here, we studied 14 purified full-length SNAREs that function in yeast endoplasmic reticulum (ER)-Golgi, intra-Golgi, endosomal, and vacuolar transport by comprehensively testing cis-QabcR-SNARE assembly and fusogenicity of reconstituted SNARE proteoliposomes. Strikingly, the cognate ER-Golgi and intra-Golgi SNARE-complex assemblies were highly stringent, whereas endosomal and vacuolar SNAREs assembled rather promiscuously into the non-cognate mixed complexes. However, these patterns of cis-SNARE assemblies cannot solely explain their potency to be fusogenic via trans-SNARE pairing: Only the vacuolar 3Q-SNARE combination is fusogenic in the absence of additional components; endosomal SNARE-dependent fusogenicity requires membrane-tethering factors; and ER-Golgi SNAREs can be fusogenic by synergistic actions of tethering factors and the cognate Sec1/Munc18-family protein Sly1p. Thus, our findings uncover multiple and distinct strategies of SNAREs to directly mediate fusion specificity.

Schizosaccharomyces pombe Pep12p is required for vacuolar protein transport and vacuolar homotypic fusion

In eukaryotic cells, SNARE proteins are essential for intracellular vesicle trafficking. Several SNARE proteins are required for vacuolar protein transport and vacuolar biogenesis in Saccharomyces cerevisiae. Previously we demonstrated that one of the fission yeast SNARE proteins, Pep12p, is not required for vacuolar fusion process in Schizosaccharomyces pombe. We have re-examined the function of S. pombe Pep12p using the newly created pep12(+) deletion strain. Deletion of the fission yeast pep12(+) gene results in pleiotropic phenotypes consistent with the absence of normal vacuoles, including missorting of vacuolar carboxypeptidase Y-and various ion- and drug-sensitivities. GFP-Pep12 fusion protein is mostly localized at the vacuolar membrane and the prevacuolar compartment. The S. pombe pep12Δ mutation phenocopies that of vps33Δ, suggesting that both Pep12p and Vps33p act at the same membrane fusion step in S. pombe, and both mutations cause vacuolar deficiency.

Epsin N-terminal homology domains bind on opposite sides of two SNAREs

SNARE proteins are crucial for membrane fusion in vesicular transport. To ensure efficient and accurate fusion, SNAREs need to be sorted into different budding vesicles. This process is usually regulated by specific recognition between SNAREs and their adaptor proteins. How different pairs of SNAREs and adaptors achieve their recognition is unclear. Here, we report the recognition between yeast SNARE Vti1p and its adaptor Ent3p derived from three crystal structures. Surprisingly, this yeast pair Vti1p/Ent3p interacts through a distinct binding site compared to their homologues vti1b/epsinR in mammals. An opposite surface on Vti1p_Habc domain binds to a conserved area on the epsin N-terminal homology (ENTH) domain of Ent3p. Two-hybrid, in vitro pull-down and in vivo experiments indicate this binding interface is important for correct localization of Vti1p in the cell. This previously undescribed discovery that a cargo and adaptor pair uses different binding sites across species suggests the diversity of SNARE-adaptor recognition in vesicular transport.

Multisubunit Tethering Complexes and Their Role in Membrane Fusion

Protein trafficking within eukaryotic cells depends on vesicular carriers that fuse with organelles to deliver their lipid and protein content. Cells have developed an elaborate system to capture vesicles at organelles that involves the action of Rab GTPases and tethers. Vesicle fusion then takes place with the help of SNARE proteins. In this review we focus on the role of multisubunit tethering complexes of eukaryotic cells. In particular, we discuss the tethering complexes of the secretory pathway and the endolysosomal system and highlight recent evidence for the role of these complexes in interaction with Rabs, coat recognition and cooperation with SNAREs during the fusion cascade.

Glucose‐induced insulin secretion: is the small G‐protein Rab27A the mediator of the KATP channel‐independent effect?

From yeast to neurones, living cells communicate with their environment by secretion of substances through regulated exocytosis. The substances are stored in secretory granules within the cytosol. As the cells, their needs and function are extremely divergent, synthesis, storage and secretion of cellular products are adapted. Although the regulation of exocytosis is cell specific the secretory machineries are amazingly similar. Whether in yeast, neurone or insulin-secreting cells SNARE proteins enable the fusion of the two membranes, the vesicular and plasma membrane and the release of cell-made material. SNARE protein interaction, i.e. fusion, is largely regulated by Ca2+. Small G proteins comprise another protein family that is evolutionary highly conserved. Distinct members of this family regulate the formation, the directed trafficking and the fusion of vesicles. Rab3A and Rab27A are two small G proteins identified to be involved in insulin release (Regazzi et al. 1992; Olszewski et al. 1994; Yi et al. 2002). Another vesicular protein, granuphilin that mediates granule docking to the plasma membrane is an effector of Rab27A. Kasai et al. (2005) demonstrated that rab27A-deficient ashen mice exhibit glucose intolerance due to insufficient glucose-induced insulin secretion while granuphilin-deficient insulin secreting cells release a higher amount of insulin. These observations are puzzling and suggest that granuphilin inhibits while Rab27A promotes granule fusion. Measurement of membrane capacitance using the patch clamp method allows the on-line observation of exo- and endocytotic events in cells under voltage clamp and the analysis of kinetic changes of plasma membrane surface area. Brief depolarizing voltage pulses are applied to mimic glucose-induced action potentials that result in Ca2+ influx through voltage-dependent Ca2+ channels. The immediate quantal increase in capacitance has been proposed to represent the readily releasable pool (RRP) of already docked insulin-containing vesicles (Olofsson et al. 2002). With a rise in glucose concentration, the increase in capacitance is enlarged due to a recruitment of additional granules to the RRP. This effect of glucose is mimicked by larger and repetitive depolarizing pulses. Shorter and smaller depolarization results in smaller increases in capacitance from the immediate releasable pool (IRP) of granules. It seems logical that the RRP represents the first, rapid phase of insulin secretion after glucose stimulation while the second slow phase of secretion when glucose remains high may mainly result from granules recruited to the plasma membrane from the reserve pool. The study published in this issue of The Journal of Physiology by Merrins & Stuenkel (2008) used the approach of capacitance measurements to examine the effect of rab27A deficiency in ashen islet cells on IRP and RRP mobilization and refilling. Via a pulse protocol of five short (50 ms) and eight long (500 ms) depolarizing pulses, the size of IRP and RRP, respectively, was analysed. The repetition of the pulse protocol allowed the analysis of the refilling of the pools. The capacitance changes to the first pulse trail were not different between wild type and ashen mouse islet cells while the answer to the second pulse trail was reduced in ashen islet cells. This observation confirms convincingly that docking, i.e. IRP and RRP, is not changed by Rab27A deficiency but refilling the pools. This refilling deficiency was antagonized by cAMP, an effect blocked by the inhibition of protein kinase A, indicating that cAMP facilitates exocytosis independent of Rab27A expression. Increasing the glucose concentration incompletely restored refilling of RRP in ashen islet cells. Interestingly, the deficiency of refilling is thus specific for glucose. Total internal reflection microscopy (TRIFM), a method that allows the analysis of granule movement and fusion in living cells, was used by Nagamatsu and colleagues (Nagamatsu, 2006). They confirmed that after glucose stimulation, mainly docked granules are released immediately followed by recruited granules. Kasai et al. (2008) present a detailed analysis of the provenance of granules during K+- and glucose-induced insulin release. They found that K+ initiated secretion within 5 s and mainly docked granules (80%) underwent fusion. In contrast, glucose-induced exocytosis started after 20 s and only 30% of granules originated from the docked pool but 70% from the reserve pool. In ashen mice, granule fusion in islet cells induced by glucose but not by K+ was reduced mainly due to reduced recruitment from the reserve pool. These observations support a new concept that IRP and RRP are granule pools with variable Ca2+ sensitivities and are docked to and blocked at the plasma membrane via granuphilin. These granules become more sensitive to Ca2+-mediated fusion when granuphilin-dependent blocking is ameliorated by Rab27A. Glucose exerts a dual effect: it stimulates docked granules through Ca2+ influx as does K+ and via an unknown mechanism it stimulates Rab27A that activates docked granules as well as recruits granules to the plasma membrane. In this concept Rab27A may mediate the KATP channel-independent effect of glucose on insulin secretion.

ENTH domain proteins as cargo adaptors for several yeast and mammalian SNARE proteins at the TGN/endosome

ENTH domain proteins as cargo adaptors for several yeast and mammalian SNARE proteins at the TGN/endosome

Ca2+–synaptotagmin directly regulates t-SNARE function during reconstituted membrane fusion

In nerve terminals, exocytosis is mediated by SNARE proteins and regulated by Ca(2+) and synaptotagmin-1 (syt). Ca(2+) promotes the interaction of syt with anionic phospholipids and the target membrane SNAREs (t-SNAREs) SNAP-25 and syntaxin. Here, we have used a defined reconstituted fusion assay to determine directly whether syt-t-SNARE interactions couple Ca(2+) to membrane fusion by comparing the effects of Ca(2+)-syt on neuronal (SNAP-25, syntaxin and synaptobrevin) and yeast (Sso1p, Sec9c and Snc2p) SNAREs. Ca(2+)-syt aggregated neuronal and yeast SNARE liposomes to similar extents via interactions with anionic phospholipids. However, Ca(2+)-syt was able to bind and stimulate fusion mediated by only neuronal SNAREs and had no effect on yeast SNAREs. Thus, Ca(2+)-syt regulates fusion through direct interactions with t-SNAREs and not solely through aggregation of vesicles. Ca(2+)-syt drove assembly of SNAP-25 onto membrane-embedded syntaxin, providing direct evidence that Ca(2+)-syt alters t-SNARE structure.

Synaptotagmin I and Ca 2+ promote half fusion more than full fusion in SNARE-mediated bilayer fusion

Synaptic membrane fusion, which is necessary for neurotransmitter release, may be mediated by SNAREs and regulated by synaptotagmin (Syt) and Ca 2+. Fusion of liposomes mediated by reconstituted SNAREs produces full fusion and hemifusion, a membrane structure in which outer leaflets are mixed but the inner leaflets remain intact. Here, using the liposome fusion assay, it is shown that Syt promoted both hemifusion and full fusion in a Ca 2+-dependent manner. Syt · Ca 2+ increased hemifusion more than full fusion, modulating the ratio of hemifusion to full fusion. Unlike the case of neuronal SNAREs, stimulation of fusion by Syt · Ca 2+ was not seen for other SNAREs involved in trafficking in yeast, indicating that the Syt · Ca 2+ stimulation was SNARE-specific. We constructed hybrid SNAREs in which transmembrane domains were swapped between neuronal and yeast SNAREs. With these hybrid SNAREs, we demonstrated that the interaction between the SNARE motifs of neuronal proteins and Syt · Ca 2+ was required for the stimulation of fusion.

Swf1-dependent palmitoylation of the SNARE Tlg1 prevents its ubiquitination and degradation

Protein palmitoylation is a post-translational modification that affects a great number of proteins. In most cases, the enzymes responsible for this modification have not been identified. Some proteins use palmitoylation to attach themselves to membranes; however, palmitoylation also occurs in transmembrane proteins, and the function of this palmitoylation is less clear. Here we identify Swf1, a member of the DHHC-CDR family of palmitoyltransferases, as the protein responsible for modifying the yeast SNAREs Snc1, Syn8 and Tlg1, at cysteine residues close to the cytoplasmic end of their single transmembrane domains (TMDs). In an swf1Delta mutant, Tlg1 is mis-sorted to the vacuole. This occurs because unpalmitoylated Tlg1 is recognised by the ubiquitin ligase Tul1, resulting in its targeting to the multivesicular body pathway. Our results suggest that one role of palmitoylation is to protect TMDs from the cellular quality control machinery, and that Swf1 may be the enzyme responsible for most, if not all, TMD-associated palmitoylation in yeast.

YKT6 is a Core Constituent of Membrane Fusion Machineries at the Arabidopsis trans-Golgi Network

SNARE complex formation is essential for membrane fusion in exocytotic and vacuolar trafficking pathways. Vesicle-associated (v-) SNARE associates with a target membrane (t-) SNARE to form a SNARE complex bridging two membranes, which may facilitate membrane fusion. The Arabidopsis genome encodes a large number of predicted SNARE proteins that might function primarily as fusogens for vesicle transport in endomembrane systems. The SNAREs SYP41, SYP61 and VTI12 reside in the trans-Golgi network and have been proposed to function together in vesicle fusion with this organelle. Here, we use a liposome fusion assay to demonstrate that VTI12 and either SYP41 or SYP61, but not both, are required for membrane fusion. This indicates that SYP41 and SYP61 are likely to function in independent vesicle fusion reactions in Arabidopsis. In addition, we have identified two new functionally interchangeable components, YKT61 and YKT62, that show sequence similarity to the multifunctional yeast SNARE YKT6. Both YKT61 and YKT62 interact with SYP41 and are essential for membrane fusion mediated by either SYP41 or SYP61. These results therefore define the core constituents required for membrane fusion at the Arabidopsis trans-Golgi network.

A Partially Zipped SNARE Complex Stabilized by the Membrane

The SNARE complex acts centrally for intracellular membrane fusion, an essential process for vesicular transport in cells. Association between vesicle-associated (v-) SNARE and target membrane (t-) SNARE results in the coiled coil core that bridges two membranes. Here, the structure of the SNARE complex assembled by recombinant t-SNARE Sso1p/Sec9 and v-SNARE Snc2p, which are involved in post-Golgi trafficking in yeast, was investigated using EPR. In detergent solutions, SNAREs formed a fully assembled core. However, when t-SNAREs were reconstituted into the proteoliposome and mixed with the soluble SNARE motif of Snc2p, a partially zipped core in which the N-terminal region is structured, whereas the C-terminal region is frayed, was detected. The partially zipped and fully assembled complexes coexisted with little free energy difference between them. Thus, the core complex formation of yeast SNAREs might not serve as the energy source for the fusion, which is different from what has been known for neuronal SNAREs. On the other hand, the results from the proteoliposome fusion assay, employing cysteine- and nitroxide-scanning mutants of Sso1p, suggested that the formation of the complete core is required for membrane fusion. This implies that core SNARE assembly plays an essential role in setting up the proper geometry of the lipid-protein complex for the successful fusion.

Intramolecular protein-protein and protein-lipid interactions control the conformation and subcellular targeting of neuronal Ykt6.

Although the membrane-trafficking functions of most SNAREs are conserved from yeast to humans, some mammalian SNAREs have evolved specialized functions unique to multicellular life. The mammalian homolog of the prenylated yeast SNARE Ykt6p might be one such example, because rat Ykt6 is highly expressed only in brain neurons. Furthermore, neuronal Ykt6 displayed a remarkably specialized, punctate localization that did not overlap appreciably with conventional compartments of the endomembrane system, suggesting that Ykt6 might be involved in a pathway unique to or specifically modified for neuronal function. Targeting of Ykt6 to its unique subcellular location was directed by its profilin-like longin domain. We have taken advantage of high-resolution structural data available for the yeast Ykt6p longin domain to examine mechanisms by which the mammalian longin domain controls Ykt6 conformation and subcellular targeting. We found that the overall tertiary structure of the longin domain, not sequence-specific surface features, drives direct targeting to the Ykt6 punctate structures. However, several sequence-specific surface features of the longin domain indirectly regulate Ykt6 localization through intramolecular interactions that mask otherwise-dominant targeting signals on the SNARE motif and lipid groups. Specifically, two hydrophobic binding pockets, one on each face of the longin domain, and one mixed hydrophobic/charged surface, participate in protein-protein interactions with the SNARE motif and protein-lipid interactions with the lipid group(s) at the molecule's C-terminus. One of the hydrophobic pockets suppresses protein-palmitoylation-dependent mislocalization of Ykt6 to the plasma membrane. The Ykt6 intramolecular interactions would be predicted to create a compact, closed conformation of the SNARE that prevents promiscuous targeting interactions and premature insertion into membranes. Interestingly, both protein-protein and protein-lipid interactions are required for a tightly closed conformation and normal targeting.

Constitutive versus regulated SNARE assembly: a structural basis.

SNARE complex formation is essential for intracellular membrane fusion. Vesicle-associated (v-) SNARE intertwines with target membrane (t-) SNARE to form a coiled coil that bridges two membranes and facilitates fusion. For the SNARE family involved in neuronal communications, complex formation is tightly regulated by the v-SNARE-membrane interactions. However, it was found using EPR that complex formation is spontaneous for a different SNARE family that is involved in protein trafficking in yeast. Further, reconstituted yeast SNAREs promoted membrane fusion, different from the inhibited fusion for reconstituted neuronal SNAREs. The EPR structural analysis showed that none of the coiled-coil residues of yeast v-SNARE is buried in the hydrophobic layer of the membrane, making the entire coiled-coil motif accessible, again different from the deep insertion of the membrane-proximal region of neuronal v-SNARE into the bilayer. Importantly, yeast membrane fusion is constitutively active, while synaptic membrane fusion is regulated, consistent with the present results for two SNARE families. Thus, the v-SNARE-membrane interaction may be a major molecular determinant for regulated versus constitutive membrane fusion in cells.