Xenia Effect Research Articles

Can the xenia effect on long-distance mRNA transport be used to improve fruit traits?

Can the xenia effect on long-distance mRNA transport be used to improve fruit traits?

Transcriptome Profiles Reveal That Phytohormone Signal Transduction-related Genes Involved in Regulating Xenia in Rabbiteye Blueberry

Blueberries are small perennial evergreen or deciduous shrub berries of the genus Vaccinium in Ericaceae family. Pollination with different parental genotypes has significant effects on fruit size, fruit harvest time, fruit firmness, and chemical composition, such as soluble solids, titratable acids, anthocyanins, fructose, sucrose, glucose, flavonoids, and total phenols, showing an evident xenia effect. To understand the molecular mechanism and biosynthetic pathways involved in the xenia effect in rabbiteye blueberry, we employed transcriptome profiling by RNA sequencing to identify differentially expressed genes (DEGs) during fruit development of the variety ‘Premier’ produced by self and cross-pollination with ‘Brightwell’ and ‘Powderblue’. On the basis of the transcriptomic sequences, DEGs related to plant hormone signal transduction were identified through bioinformatics analysis, screening of DEGs, and functional enrichment analysis. The results showed that the single fruit weight and the contents of anthocyanins fructose, glucose, and sucrose showed significant differences between self- and cross-pollinated fruits, demonstrating a distinct xenia effect. High-throughput sequencing was conducted on the transcriptomes of young fruits harvested at six developmental stages (at 10-day intervals from 40 to 90 days after self- and cross-pollination). After screening and identification, 16.37 million to 25.52 million raw reads were generated and 4,937,201,302 to 7,709,896,920 clean bases were obtained. The comparison group of 80-day-old fruits generated through self-pollinated ‘Premier’ and those crossed with ‘Brightwell’ (PBR-80 vs. PPR-80) showed the largest number of DEGs (6377), of which 3052 were upregulated and 3325 were downregulated. Through further screening, 174 DEGs were found related to plant hormone signal transduction, comprising 147 known genes and 27 new genes and that 76 genes were downregulated and 98 genes were upregulated. Of the eight DEGs randomly selected for quantitative real-time polymerase chain reaction verification, their expression patterns were consistent with those revealed by high-throughput sequencing. The results elucidated the underlying mechanism of xenia, thereby providing a solid theoretical foundation for the targeted breeding, quality control, and improvement of economic benefits of blueberry, which are of important theoretical value and practical significance.

Exploring the Xenia Effect: Differential Responses of Six Pollen Parents with Five Maternal Apple Cultivars

Exploring the Xenia Effect: Differential Responses of Six Pollen Parents with Five Maternal Apple Cultivars

The Fastest and Most Reliable Identification of True Hybrids in the Genus Pisum L.

After crosses, the identification of true hybrids is not only the most important step in the initiation of a breeding program but also plays a crucial role in the improvement of hybrid varieties. However, current morphological or molecular-based hybrid identification methods are time-consuming and costly approaches that require knowledge and skill, as well as specific lab equipment. In the current study, xenia, direct or immediate effect of pollen on seeds was used to identify true hybrids in the genus Pisum L. for the first time without growing F1 plants. The current study was therefore aimed to (i) elucidate the xenia effect on seeds in intra- and interspecific crosses between P. sativum L. subsp. sativum var. sativum or var. arvense L. Poir. and its wild relatives, including P. sativum subsp. elatius (M. Bieb.) Aschers & Graebn. and P. fulvum Sibth. & Sm., and (ii) illuminate the beneficialness of the xenia effect in a practical improvement of the genus Pisum L. The pea cultivars, including P. sativum subsp. sativum var. sativum and P. sativum subsp. sativum var. arvense, were therefore crossed with P. sativum subsp. elatius and P. fulvum, and the occurrence of the xenia effect was studied on the seeds of fertilized female plants immediately after the crosses. It was concluded that using the xenia effect for the early detection of true hybrid immediately after crossing was not only the fastest, most reliable, and least expensive option as early selection criteria, but that xenia also provided information about dominant seed and pod traits after double fertilization.

Integrated transcriptome and metabolome analysis unveiled the mechanisms of xenia effect and the role of different pollens on aroma formation in ‘Yali’ pear (Pyrus bretschneideri Rehd)

• ‘Hongnanguo’ pollinizer has a xenia effect on ‘Yali’ pear fruits aroma quality. • 189 DAMs and 12,032 DEGs were identified. • ‘Hongnanguo’ pollinizer increased the content of ABA, IAA, and ethylene. • Established a possible regulatory network of the mechanism of xenia effect on pear aroma formation. The flavor of ‘Yali’ pear fruits has substantially declined recently as a result of poor pollination tree selection. Xenia effect is a powerful mechanism for regulating aroma production. To study the effect of different pollens on aroma quality and the molecular basis of xenia effect in ‘Yali’ pear fruits, ‘Hongnanguo’ and ‘Xuehuali’ were used as pollinizers, and the hybrid fruits were named YH and YX, respectively. Metabolome, transcriptome, volatile compounds, and hormone were jointly analyzed in YH and YX peels with three ripening stages. After pollinating with ‘Hongnanguo’ pollen, the contents of total aroma, esters and nerolidol, the odor activity value of characteristic volatiles in YH were significantly increased, compared with the aroma character of the pollinizer cultivars, indicating ‘Hongnanguo’ pollinizer has a xenia effect on ‘Yali’ pear fruits aroma quality. Further, the content of ABA, IAA, and ethylene reveal the differences during aroma formation between YH and YX. 189 differentially accumulated metabolites (DAMs) and 12,032 differentially expressed genes (DEGs) were identified. Based on co-expression network analysis, network maps of ‘Yali’ pear aroma-related DEGs were generated. We surmise aroma biosynthesis genes ( ADH, ALDH, NES , and FPS ), ABA, IAA, ethylene signal transduction, and several transcription factors play important roles in the xenia effect.

Identification of MicroRNAs Related to Phytohormone Signal Transduction and Self-incompatibility of Rabbiteye Blueberry Pollen

MicroRNAs (miRNAs) related to phytohormone signal transduction and self-incompatibility may play an important role in the xenia effect. However, associated research in this area is still lacking in rabbiteye blueberry (Vaccinium ashei). In this study, we identified miRNAs, predicted their target genes, performed functional enrichment analysis of the target genes, and screened for miRNAs related to phytohormone signaling and self-incompatibility. A total of 491 miRNAs were identified, of which 27 and 67 known miRNAs as well as 274 and 416 new miRNAs were found in the rabbiteye blueberry cultivars Brightwell and Premier, respectively. Compared with ‘Premier’, 31 miRNAs were upregulated and 62 miRNAs were downregulated in ‘Brightwell’. Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analysis indicated that the 4985 target genes predicted were involved in biosynthesis of amino acids, plant–pathogen interaction, and spliceosome pathways. A total of 10, one, one, five, two, five, and two candidate miRNAs related to auxin, cytokinin, gibberellin, abscisic acid, ethylene, brassinosteroid, and salicylic acid signaling, respectively, in rabbiteye blueberry pollen were identified. Further analysis indicated that novel_miR_49 was a candidate miRNA related to self-incompatibility, and their target gene was maker-VaccDscaff21-snap-gene-21.37. In addition, the KEGG enrichment analysis of the target genes of novel_miR_49 showed that they were involved in the ribosome, aminoacyl-tRNA biosynthesis, and glycosylphosphatidylinositol-anchor biosynthesis pathways. The results revealed that the microRNAs of rabbiteye blueberry pollen regulated to phytohormone signal transduction and self-incompatibility signal transduction based on related to auxin, cytokinin, gibberellin, abscisic acid, ethylene, brassinosteroid, and salicylic acid signaling. Results suggest that more research of the effects of miRNAs on regulation of hormone signal transduction and self-incompatibility is necessary for elucidating the molecular mechanism of the xenia effect.

Effect of pollen sources on fruit set and quality of edible fig (Ficus carica L.) cv. ‘Bursa Siyahı’

The caprification practice has been used widely in fig cultivation because it affects the yield and quality of fig fruits, a phenomenon known as the ‘xenia effect’. The present study was conducted to investigate the effects of pollen sources on fruit sets and fruit quality in the ‘Bursa Siyahı’ fig cultivar in 2017 and 2018. The eleven male genotypes and five cultivars were used as pollen source. The findings obtained in the present study showed that pollen sources significantly affected fruit set, early fruiting rate, fruit size, ostiole width, skin and flesh thickness, titratable acidity (TA), pH, and soluble solids content (SSC). The fruit set ratio varied from 32.02% (‘16 03 06’) to 76.66% (‘16 08 07’), and fruit weight varied from 77.29 g (‘16 03 06’) to 106.88 g (‘16 00 01’) based on pollen sources. The ostiole diameter ranged from 3.84 mm (‘16 ZF 08’) to 7.67 mm (‘77 00 01’). The skin thickness ranged from 3.01 mm (‘Havran’) to 5.35 mm (‘16 00 01’). The principal component analysis was performed to distinguish the pollen sources for the ‘Bursa Siyahı’ cultivar. The analysis proposed that the most important factors affecting the fig quality can be reduced to five components. Fruit weight (0.958), skin thickness (0.810), flesh l* value (0.821), pH (-0.872), and SSC (0.836) value could be regarded as the characteristic indicators for PC1, PC2, PC3, PC4, and PC5, respectively. The results showed that ‘16 09 10’, ‘16 05 03’, ‘16 08 07’, and ‘16 08 12’ pollen sources are adequate pollinators for the edible ‘Bursa Siyahı’ fig.

Paternal imprinting of dosage-effect defective1 contributes to seed weight xenia in maize

Historically, xenia effects were hypothesized to be unique genetic contributions of pollen to seed phenotype, but most examples represent standard complementation of Mendelian traits. We identified the imprinted dosage-effect defective1 (ded1) locus in maize (Zea mays) as a paternal regulator of seed size and development. Hypomorphic alleles show a 5–10% seed weight reduction when ded1 is transmitted through the male, while homozygous mutants are defective with a 70–90% seed weight reduction. Ded1 encodes an R2R3-MYB transcription factor expressed specifically during early endosperm development with paternal allele bias. DED1 directly activates early endosperm genes and endosperm adjacent to scutellum cell layer genes, while directly repressing late grain-fill genes. These results demonstrate xenia as originally defined: Imprinting of Ded1 causes the paternal allele to set the pace of endosperm development thereby influencing grain set and size.

The Xenia Effect Promotes Fruit Quality and Assists in Optimizing Cross Combinations in ‘O’Neal’ and ‘Emerald’ Blueberry

Cross-pollination can improve the fruit set and quality of blueberry (Vaccinium spp.) for growers and consumers. However, the xenia effect in southern highbush blueberry remains unclear. Therefore, we selected eight cultivars of southern highbush blueberry (Vaccinium corymbosum L., interspecific hybrids) and applied pollination treatments (i.e., artificial self-pollination, artificial pollination with mixed pollen, or artificial pollination with individual cultivar pollen) to explore the xenia effects on the fruit set and quality of ‘O’Neal’ and ‘Emerald’. Pollen viability tests indicated that all of the cultivars are capable of fertilization. The highest fruit set came from ‘Bluerain’ pollen for ‘O’Neal’, while ‘Gulfcoast’ pollen increased fruit set the most in ‘Emerald’. Principal component analysis revealed that the cross combinations ‘Emerald’ × ‘Gulfcoast’ and ‘O’Neal’ × ‘Gulfcoast’ optimized the external and interior quality of the fruit. SSR was applied to determine which pollen source yielded the most seedlings. Results indicated that ‘Emerald’ × ‘Gulfcoast’ and ‘O’Neal’ × ‘Bluerain’ increased seedling production. Our results demonstrate that the xenia effects of ‘Gulfcoast’ pollen may increase ‘Emerald’ yields and promote fruit quality, while pollen from ‘Bluerain’ or ‘Jewel’ can improve ‘O’Neal’ fruit quality and seed number. Hence, these cross combinations may be utilized in blueberry production to increase fruit set, yield, and quality.

Suitable pollen source for the improvement of fruit and seed traits in Xanthoceras sorbifolium

Xanthoceras sorbifolium with high oil content in seeds has been used for various purposes, including as edible oil and feedstock for biodiesel production; however, the large-scale commercial cultivation of this species is severely hindered by the poor seed yield. As a self-incompatible species, whether a suitable pollen source can effectively improve yield and fruit traits of super clones has not been confirmed in X. sorbifolium. In the present study, cross pollination, mixed pollination, and natural pollination were conducted in five super clones. For all clones, the highest pollen germination was observed one day before flowering 84.26–90.25% (**p < 0.01). The final fruit set ratio (FFSR) was significantly influenced by the pollen source (*p < 0.05). Hand pollination had a positive effect on FFSR and seed yield (*p < 0.05). Fruit width and 1000-seed weight were significantly influenced by pollen source (*p < 0.05). Fruit weight, length, seed number per fruit, seed-producing ratio, seed yield, seed size, kernel ratio, and chemical components were significantly affected by the recipient × pollen source (**p < 0.01). In all combinations, the maximum seed yield occurred in the combination No. 2 × No. 3. The xenia effect occurred in the 1000-seed weight and kernel starch concentration. Based on these traits, the most suitable pollen source for each super clone was identified. This study suggests the significance of a suitable pollen source and collocation of pollinizer trees, especially in X. sorbifolium plantations, which can be applied in its cultivation and yield improvement.

Integrated Transcriptome and Metabolome Analysis Unveiled the Mechanisms of Xenia Effect and the Role of Different Pollens on Aroma Formation in ‘Yali’ Pear (Pyrus Bretschneideri Rehd.)

Integrated Transcriptome and Metabolome Analysis Unveiled the Mechanisms of Xenia Effect and the Role of Different Pollens on Aroma Formation in ‘Yali’ Pear (Pyrus Bretschneideri Rehd.)

Morpho-phenological Variability of Flowers Traits and Hybridization of Five Inbred Lines of Cowpea [Vigna unguiculata (L.) Walp.] in Côte d'Ivoire

Knowledge of the morphology and floral phenology and the mastery of a manual pollination technique in a plant species are essential for its genetic improvement.&#x0D; The objective of this work will be to determine the morpho-phenological characteristics of the flowers of five self-fertilization lines of cowpea and to identify an indicated manual pollination technique.&#x0D; The study was carried out in the Botanical Garden of University Peleforo GON COULIBALY, Côte d’Ivoire where 10 morpho-phenological characters of the flower were evaluated on five lines of cowpea self-fertilization. Thus, three manual pollination techniques (A, B and C) were tested by evaluating traits such as knotting rates, filling rates and maternal and paternal effects on fruit yields.&#x0D; The results revealed four stages of flower development in cowpea. These are successively stage of “floral button initiation”, “dark green floral button”, “pale green or pale-yellow floral button” and “blooming flower”. Of the three manual pollination techniques tested, technique C resulted in higher rates of knotting (45.38%) and pod filling (58.03%). Results also showed significant maternal and xenia effects on fruit yields in the cowpea.&#x0D; On the basis of the results generated on the floral biology of the cowpea, it appears that a hybridization program can now be conducted at the UPGC Botanical Garden for the creation of high-performance varieties adapted to climate change for the benefit of producers in Côte d’Ivoire.

SNP markers reveal relationships between fruit paternity, fruit quality and distance from a cross-pollen source in avocado orchards

Cross-pollination can improve fruit yield, fruit size and nutritional quality of many food crops. However, we rarely understand what proportions of the crop result from self- or cross-pollination, how cross-pollination affects crop quality, and how far pollen is transported by pollinators. Management strategies to improve pollination services are consequently not optimal for many crops. We utilised a series of SNP markers, unique for each cultivar of avocado, to quantify proportions of self- and cross-paternity in fruit of Hass avocado at increasing distances from cross-pollen sources. We assessed whether distance from a cross-pollen source determined the proportions of self-pollinated and cross-pollinated fruit, and evaluated how self- and cross-paternity affected fruit size and nutritional quality. Avocado fruit production resulted from both self- and cross-pollination in cultivar Hass in Queensland, Australia. Cross-pollination levels decreased with increasing distance from a cross-pollen source, from 63% in the row adjacent to another cultivar to 25% in the middle of a single-cultivar block, suggesting that pollen transport was limited across orchard rows. Limited pollen transport did not affect fruit size or quality in Hass avocados as xenia effects of a Shepard polliniser on size and nutritional quality were minor.

Pollen limitation and xenia effects in a cultivated mass-flowering tree, Macadamia integrifolia (Proteaceae).

Pollen limitation is most prevalent among bee-pollinated plants, self-incompatible plants and tropical plants. However, we have very little understanding of the extent to which pollen limitation affects fruit set in mass-flowering trees despite tree crops accounting for at least 600 million tons of the 9200 million tons of annual global food production. We determined the extent of pollen limitation in a bee-pollinated, partially self-incompatible, subtropical tree by hand cross-pollinating the majority of flowers on mass-flowering macadamia (Macadamia integrifolia) trees that produce about 200 000-400 000 flowers. We measured tree yield and kernel quality and estimated final fruit set. We genotyped individual kernels by MassARRAY to determine levels of outcrossing in orchards and assess paternity effects on nut quality. Macadamia trees were pollen-limited. Supplementary cross-pollination increased nut-in-shell yield, kernel yield and fruit set by as much as 97, 109 and 92 %, respectively. The extent of pollen limitation depended upon the proximity of experimental trees to trees of another cultivar because macadamia trees were highly outcrossing. Between 84 and 100 % of fruit arose from cross-pollination, even at 200 m (25 rows) from orchard blocks of another cultivar. Large variations in nut-in-shell mass, kernel mass, kernel recovery and kernel oil concentration were related to differences in fruit paternity, including between self-pollinated and cross-pollinated fruit, thus demonstrating pollen-parent effects on fruit quality (i.e. xenia). This study is the first to demonstrate pollen limitation in a mass-flowering tree. Improved pollination led to increased kernel yield of 0.31-0.59 tons ha-1, which equates currently to higher farm-gate income of approximately $US3720-$US7080 ha-1. The heavy reliance of macadamia flowers on cross-pollination and the strong xenia effects on kernel mass demonstrate the high value that pollination services can provide to food production.

Bootstrap simulations for evaluating the model estimation of the extent of cross-pollination in maize at the field-scale level.

With the recent advent of genetic engineering, numerous genetically modified (GM) crops have been developed, and field planting has been initiated. In open-environment cultivation, the cross-pollination (CP) of GM crops with wild relatives, conventional crops, and organic crops can occur. This exchange of genetic material results in the gene flow phenomenon. Consequently, studies of gene flow among GM crops have primarily focused on the extent of CP between the pollen source plot and the adjacent recipient field. In the present study, Black Pearl Waxy Corn (a variety of purple glutinous maize) was used to simulate a GM-maize pollen source. The pollen recipient was Tainan No. 23 Corn (a variety of white glutinous maize). The CP rate (%) was calculated according to the xenia effect on kernel color. We assessed the suitability of common empirical models of pollen-mediated gene flow (PMGF) for GM maize, and the field border (FB) effect of the model was considered for small-scale farming systems in Asia. Field-scale data were used to construct an optimal model for maize PMGF in the maize-producing areas of Chiayi County, southern Taiwan (R.O.C). Moreover, each model was verified through simulation and by using the 95% percentile bootstrap confidence interval length. According to the results, a model incorporating both the distance from the source and the FB can have optimal fitting and predictive abilities.

The Effect of Pollen on The Cross of Black Corn, Waxy Corn (Zea Mays Ceratina), and Sweet Corn (Zea Mays Saccharata) on the Seed Characters

The expression of genes resulting from crosses from male parents and female parents will be seen in the next plant generation, where the pollen effect of male parent called xenia effect really determines the direction of its expressiveness to produce superior cultivars. Therefore, this study aims to determine the effect of xenia on qualitative and quantitative characters as well as to obtain information on prospective male lines as parents used to form hybrid cultivars. The research was conducted at the Experimental Farm of University of Muhammadiyah Malang, East Java. The method used was a single plant selection. The cross treatments used were selfing and crossing. Observations were made on qualitative and quantitative characters. Qualitative character data were analyzed using a descriptive statistical scoring approach. Quantitative data were analyzed using independent t test with a level of 5%. The results showed that the pollen affected the variable seed color, seed shape, ear weight, ear length, ear diameter, number of seed rows, weight of 100 seeds, seed length and seed width of several crosses. From this research, it was obtained several prospective lines that can be used as male parents for the formation of hybrid corn cultivars having different seed characters.

Novel Classification Forms for Xenia

The xenia effect refers to the phenomenon whereby the pollen genotype directly affects seed and fruit development during the period from fertilization to seed germination, which leads to different characteristics in phenotypic traits. The xenia effect can create differences in the endosperm and embryo formed after double fertilization and can also alter various fruit parameters, such as the fruit-ripening period; the fruit shape, size, and color; the flavor quality, such as sugars and acids; as well as the nutrient quality, such as anthocyanins. The xenia effect manifests in various ways, playing an important role in increasing the yield of fruit trees, improving fruit appearance and internal quality, as well as in directional breeding. Compared with other pomology research areas, our understanding of the xenia effect is still in its infancy. Currently, xenia is classified into two types: xenia and metaxenia. In the former, the direct effects of the pollen genotype are exhibited in the syngamous parts of the ovules; that is, the embryo and endosperm only. In the latter, the effects of the pollen genotype are demonstrated in structures other than the embryo and endosperm; that is, in tissues derived wholly from the mother plant material, in seed parts such as the nucellus and testa, as well as in the carpels and accessory tissues. However, the current classification has various shortcomings. In the present study, we propose a novel classification based on whether the appearance of xenia results from the tissue formed by double fertilization. Three xenia types are proposed: double-fertilization xenia, non–double-fertilization xenia, and combined xenia. The new classification has great theoretical and practical significance for future studies on the xenia effect and its mechanisms and also provides a more effective, broader application of xenia in improving the yield and quality of fruit trees.

Citrus mangshanensis Pollen Confers a Xenia Effect on Linalool Oxide Accumulation in Pummelo Fruit by Enhancing the Expression of a Cytochrome P450 78A7 Gene CitLO1.

The aroma quality of citrus fruit is determined by volatiles that are present at extremely low levels in the citrus fruit juice sacs; it can be greatly improved by increasing volatiles. In this study, we showed that the contents of cis- and trans-linalool oxides were significantly increased in the juice sacs of three pummelos artificially pollinated with the Citrus mangshanensis (MS) pollen. A novel cytochrome P450 78A7 gene (CitLO1) was significantly upregulated in the juice sacs of Huanong Red pummelo pollinated with MS pollen in comparison to that with open pollination. Compared to wild-type tobacco Bright-Yellow2 cells, transgenic cells overexpressing CitLO1 promoted a 3- to 4-fold more conversion of (-)-linalool to cis- and trans-linalool oxides. Overall, our results suggest that MS pollen has a xenia effect on pummelo fruit aroma quality, and CitLO1 is a linalool oxide synthase gene that played an important role in the xenia effect.

Complementary gene interaction and xenia effect controls the seed coat colour in interspecific cross between Trifolium alexandrinum and T. apertum

Trifolium alexandrinum (Egyptian clover) is a widely cultivated winter annual fodder. Present work deals with inheritance of the seed coat colour in segregating progenies of the interspecific cross between T. alexandrinum and T. apertum. Although, both the parent species possessed yellow seed coat, the F1 seeds were black coloured in the reciprocal cross (T. apertum×T. alexandrinum). Seeds borne on individual F2 plants and the advancing generations segregated in yellow and black seed coat colour, which confirmed xenia effect. F2 seeds collected from individual F1 plants exhibited nine black and seven yellow segregation ratio. The segregation of the seed coat colour recorded from F3 to F5 generations revealed that yellow seed coat was true breeding (i.e. non-segregating) in this interspecific cross (including the reciprocal crosses). However, the black seeded progenies were either true breeding or segregated in nine black: seven yellow ratio or three black: one yellow ratio suggesting a complementary gene interaction or duplicate recessive epistasis. It indicated that the seed coat colour is controlled by complementary gene interaction along with xenia effect in interspecific crosses between T. alexandrinum and T. apertum. Occurrence of the complementary genes across the species could suggest T. apertum to be the progenitor of T. alexandrinum. Inheritance of seed coat colour in reference to its importance in Egyptian clover breeding is also discussed.

Xenia in bahiagrass: gene expression at initial seed formation

AbstractXenia is the direct effect of pollen genotype on the development and characteristics of the seed and fruit in the period that spans from fertilization to seed germination. Xenia effects cause phenotypic variations in the seed and fruit, which have importance for seed and fruit production but are not heritable to the progeny. Two hypotheses have been proposed as a mechanism for xenia: the hormonal hypothesis and the mobile mRNAs hypothesis. Although xenia effects have been studied in seeds and fruits in many crops, its effects and mechanism have been poorly studied at the molecular level. The aim of this work was to perform an initial screening of the xenia effect in the hybrid endosperm at the molecular level by differential gene expression among different pollen genotype sources from Paspalum notatum Flüggé. In order to characterize xenia effects and mechanisms, crosses were made between an emasculated mother plant with donors from two different pollen genotypes. RNA was isolated from ovaries 3 h after pollination. Some of the 24 differentially expressed transcript-derived fragments (DETDFs) provided relevant information. Four of those DETDFs were related to germination, pollen tube growth and pollen–pistil interaction. Seven DETDFs were associated with seed development and production. Finally, four DETDFs were predicted to encode for mobile mRNAs. These DETDFs might be involved in xenia effects and mechanisms in P. notatum.