Traditional wood staining processes involve the extensive use of inorganic salts and fixing agents. The exploration of a low-concentration yet highly efficient wood staining method is crucial for the low-carbon, environmentally friendly, and high-quality development of wooden products. In this study, we employed metal-organic framework (MOF) as precursors for layered double hydroxides (LDHs), achieving control over the coloration of poplar wood towards a blue-green hue through the hydrolysis-induced exchange between MOF and hydroxide ions, using an ultra-low concentration (0.016 mol/L) Cu2+ solution. Exploiting the unique micro-nano structure of LDHs and their anion exchange properties, we successfully engineered a superhydrophobic surface (WCA=151.8°) for wood by introducing hydrophobic long chains. The resulting stained wood exhibited superior water resistance, self-cleaning ability, wear resistance, resistance to UV aging, and mold prevention. A key highlight of our preparation process lies in the utilization of extremely low concentrations of metal ion solutions, emphasizing its environmentally friendly, efficient, and multifunctional characteristics. This research provides a novel and efficient green staining approach for wood, opening up new avenues for the high-quality and sustainable development of wood materials.