There is increasing adoption of winter cover crops (WCCs) in corn and soybean production in Canada, primarily to reduce erosion and increase soil organic matter content. WCCs have the potential to influence nematode communities by increasing free-living nematodes and decreasing plant-parasitic nematodes or vice versa. However, the mechanism by which WCCs change nematode community assemblages still remains a key question in soil food web ecology. We tested the hypothesis that the long-term use of rye (Secale cereale), barley (Hordeum vulgare) and oat (Avena sativa) as monocultures or mixtures promotes nematode communities and improves overall soil health conditions compared to winter fallow. The results from this study revealed that the use of WCCs generally promoted a higher abundance and diversity of nematode communities, whereas plant parasitic nematodes were the most abundant in winter fallow. Moreover, the mixtures of WCCs had more similar nematode communities compared to rye alone and winter fallow. The structure and enrichment indices were higher with WCCs, indicating higher nutrient cycling and soil suppressiveness, which are signs of healthy soil conditions. Furthermore, WCCs significantly reduced the populations of root lesion nematode Pratylenchus, although their numbers recovered and increased during the main crop stages. Additionally, mixtures of WCCs promoted the highest abundance of the stunt nematode Tylenchorhynchus, whereas winter fallow had a higher abundance of the spiral nematode Helicotylenchus during the fallow period and the main crop stages. The results show that the long-term use of cover crops can have a positive impact on nematode communities and the soil food web, but these changes depend on the type of WCCs and how they are used.